Variant report

Variant	rs17601608
Chromosome Location	chr13:30067933-30067934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr13:30067915-30068347	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
MTUS2	TF binding region
MTUS2-AS1	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10454589	1.00[YRI][hapmap]
rs7329421	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7333701	1.00[YRI][hapmap]
rs7998704	1.00[YRI][hapmap]
rs9314960	1.00[YRI][hapmap]
rs9314962	1.00[YRI][hapmap]
rs9578103	1.00[YRI][hapmap]
rs9578105	1.00[YRI][hapmap]
rs9579383	1.00[YRI][hapmap]
rs9579384	1.00[YRI][hapmap]
rs9579386	1.00[YRI][hapmap]
rs9579390	1.00[YRI][hapmap]
rs9579392	1.00[YRI][hapmap]
rs9579393	1.00[YRI][hapmap]
rs9579402	1.00[YRI][hapmap]
rs9579406	1.00[YRI][hapmap]
rs9579407	1.00[YRI][hapmap]
rs9579408	1.00[YRI][hapmap]
rs9579410	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv983696	chr13:30034016-30090454	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv430551	chr13:30061100-30113000	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3354076	chr13:30063952-30068350	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv899960	chr13:30064014-30097240	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30047200-30081000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:30055600-30070200	Weak transcription	Ovary	ovary
3	chr13:30057400-30070200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr13:30058200-30070200	Weak transcription	Right Ventricle	heart
5	chr13:30058800-30068200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr13:30058800-30070200	Weak transcription	Right Atrium	heart
7	chr13:30062000-30070200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr13:30062400-30068400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:30062400-30087200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr13:30063600-30070600	Weak transcription	Brain Angular Gyrus	brain
11	chr13:30064000-30070200	Weak transcription	Left Ventricle	heart
12	chr13:30065000-30070200	Weak transcription	Fetal Stomach	stomach
13	chr13:30065000-30077200	Weak transcription	Fetal Brain Female	brain
14	chr13:30065800-30068000	Strong transcription	Dnd41	blood
15	chr13:30066200-30070400	Weak transcription	Fetal Brain Male	brain
16	chr13:30066200-30070400	Weak transcription	Gastric	stomach
17	chr13:30066200-30071000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr13:30066400-30068200	Strong transcription	Aorta	Aorta
19	chr13:30066400-30084400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr13:30066600-30068600	Strong transcription	Fetal Muscle Leg	muscle
21	chr13:30066600-30070200	Weak transcription	Pancreas	Pancrea
22	chr13:30066600-30070400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr13:30066800-30068600	Strong transcription	Stomach Smooth Muscle	stomach
24	chr13:30067800-30068000	Enhancers	Esophagus	oesophagus
25	chr13:30067800-30068200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr13:30067800-30068600	Genic enhancers	Fetal Heart	heart

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