Variant report

Variant	rs7329421
Chromosome Location	chr13:30071245-30071246
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30059938..30062417-chr13:30069208..30071863,2	MCF-7	breast:
2	chr13:30069723..30071518-chr13:30169502..30172461,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139514	Chromatin interaction
ENSG00000179141	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10454589	1.00[YRI][hapmap]
rs17601608	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7333701	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7998704	1.00[YRI][hapmap]
rs9314960	1.00[YRI][hapmap]
rs9314962	1.00[YRI][hapmap]
rs9578103	1.00[YRI][hapmap]
rs9578104	1.00[MEX][hapmap]
rs9578105	1.00[YRI][hapmap]
rs9579383	1.00[YRI][hapmap]
rs9579384	1.00[YRI][hapmap]
rs9579386	1.00[MEX][hapmap];1.00[YRI][hapmap]
rs9579388	1.00[MEX][hapmap]
rs9579389	1.00[MEX][hapmap]
rs9579390	1.00[MEX][hapmap];1.00[YRI][hapmap]
rs9579392	1.00[YRI][hapmap]
rs9579393	1.00[MEX][hapmap];1.00[YRI][hapmap]
rs9579402	1.00[YRI][hapmap]
rs9579406	1.00[YRI][hapmap]
rs9579407	1.00[YRI][hapmap]
rs9579408	1.00[YRI][hapmap]
rs9579410	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv983696	chr13:30034016-30090454	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv430551	chr13:30061100-30113000	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv899960	chr13:30064014-30097240	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv561392	chr13:30071245-30091819	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30047200-30081000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:30062400-30087200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:30065000-30077200	Weak transcription	Fetal Brain Female	brain
4	chr13:30066400-30084400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:30068000-30071800	Enhancers	Primary B cells from peripheral blood	blood
6	chr13:30068200-30072600	Weak transcription	Aorta	Aorta
7	chr13:30068400-30071800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr13:30068400-30072000	Enhancers	Primary B cells from cord blood	blood
9	chr13:30069400-30071400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr13:30069600-30072400	Enhancers	Fetal Heart	heart
11	chr13:30069800-30071400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr13:30070000-30071400	Enhancers	Primary hematopoietic stem cells	blood
13	chr13:30070200-30071400	Enhancers	Duodenum Mucosa	Duodenum
14	chr13:30070200-30071400	Enhancers	Esophagus	oesophagus
15	chr13:30070200-30071400	Enhancers	Lung	lung
16	chr13:30070200-30071400	Enhancers	Right Atrium	heart
17	chr13:30070200-30071400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr13:30070200-30071600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr13:30070200-30071600	Enhancers	Right Ventricle	heart
20	chr13:30070200-30071600	Enhancers	Stomach Smooth Muscle	stomach
21	chr13:30070200-30071600	Enhancers	Spleen	Spleen
22	chr13:30070200-30071800	Enhancers	Brain Cingulate Gyrus	brain
23	chr13:30070200-30071800	Bivalent Enhancer	Placenta	Placenta
24	chr13:30070200-30072000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr13:30070200-30072000	Bivalent Enhancer	Adipose Nuclei	Adipose
26	chr13:30070200-30072200	Enhancers	Fetal Muscle Trunk	muscle
27	chr13:30070200-30072800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr13:30070200-30072800	Enhancers	Ovary	ovary
29	chr13:30070200-30072800	Enhancers	Placenta Amnion	Placenta Amnion
30	chr13:30070200-30073200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr13:30070200-30075600	Enhancers	Fetal Stomach	stomach
32	chr13:30070400-30071600	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr13:30070400-30071800	Enhancers	H1 Cell Line	embryonic stem cell
34	chr13:30070400-30071800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
35	chr13:30070400-30071800	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr13:30070400-30071800	Enhancers	Fetal Lung	lung
37	chr13:30070400-30072000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr13:30070400-30073000	Enhancers	HSMMtube	muscle
39	chr13:30070600-30071600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
40	chr13:30070600-30071800	Enhancers	Brain Hippocampus Middle	brain
41	chr13:30070600-30072000	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr13:30070600-30072400	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr13:30070600-30072600	Enhancers	Fetal Muscle Leg	muscle
44	chr13:30070600-30077200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr13:30070600-30077200	Weak transcription	Brain Anterior Caudate	brain
46	chr13:30070800-30071400	Weak transcription	Brain Germinal Matrix	brain
47	chr13:30070800-30071600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr13:30070800-30071800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr13:30070800-30071800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr13:30070800-30071800	Bivalent Enhancer	Fetal Intestine Small	intestine

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