Variant report

Variant	rs1760985
Chromosome Location	chr14:65662153-65662154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1620873	0.86[ASN][1000 genomes]
rs1679870	0.96[ASN][1000 genomes]
rs1679872	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1679873	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1679874	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1679875	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1679879	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1679881	0.86[ASN][1000 genomes]
rs1760983	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1760984	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2622638	0.98[ASN][1000 genomes]
rs57425656	0.81[EUR][1000 genomes]
rs6573593	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs753648	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs766906	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564932	chr14:65660502-65691545	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65660600-65663000	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:65661000-65662200	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr14:65661000-65662600	Enhancers	HepG2	liver
4	chr14:65661400-65665000	Weak transcription	Fetal Intestine Large	intestine
5	chr14:65661400-65665000	Weak transcription	Fetal Intestine Small	intestine
6	chr14:65661600-65663000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:65661800-65662200	Enhancers	Primary B cells from cord blood	blood
8	chr14:65661800-65662200	Active TSS	GM12878-XiMat	blood
9	chr14:65661800-65662400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr14:65661800-65662400	Weak transcription	Brain Substantia Nigra	brain
11	chr14:65661800-65663000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr14:65661800-65663000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr14:65662000-65662200	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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