Variant report

Variant	rs17613199
Chromosome Location	chr8:69882058-69882059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11997293	1.00[EUR][1000 genomes]
rs17613308	0.98[EUR][1000 genomes]
rs4342609	1.00[EUR][1000 genomes]
rs57544418	0.83[EUR][1000 genomes]
rs59863294	0.98[EUR][1000 genomes]
rs62511334	0.93[EUR][1000 genomes]
rs62514667	1.00[EUR][1000 genomes]
rs62514668	1.00[EUR][1000 genomes]
rs62514669	1.00[EUR][1000 genomes]
rs62514670	1.00[EUR][1000 genomes]
rs7822722	0.83[EUR][1000 genomes]
rs7844917	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv33049	chr8:69836813-69943360	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69879600-69917200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69879800-69882800	Weak transcription	HSMMtube	muscle
3	chr8:69880200-69882800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:69880200-69885600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:69880400-69882800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:69880400-69882800	Weak transcription	HSMM	muscle
7	chr8:69880600-69882200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:69880800-69882400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:69880800-69882600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:69880800-69882600	Weak transcription	Osteobl	bone
11	chr8:69881000-69882600	Weak transcription	NHDF-Ad	bronchial
12	chr8:69881200-69883800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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