Variant report

Variant	rs59863294
Chromosome Location	chr8:69883329-69883330
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11997293	0.98[EUR][1000 genomes]
rs17613199	0.98[EUR][1000 genomes]
rs17613308	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4342609	0.98[EUR][1000 genomes]
rs57544418	0.81[EUR][1000 genomes]
rs62511334	0.91[EUR][1000 genomes]
rs62514667	0.98[EUR][1000 genomes]
rs62514668	0.98[EUR][1000 genomes]
rs62514669	0.98[EUR][1000 genomes]
rs62514670	0.98[EUR][1000 genomes]
rs7822722	0.81[EUR][1000 genomes]
rs7844917	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv33049	chr8:69836813-69943360	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69879600-69917200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69880200-69885600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:69881200-69883800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:69882200-69884400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:69882400-69883600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:69882400-69883800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:69882400-69884200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr8:69882400-69884400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:69882600-69883600	Enhancers	Osteobl	bone
10	chr8:69882600-69883800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr8:69882600-69883800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:69882600-69883800	Enhancers	NHDF-Ad	bronchial
13	chr8:69882800-69883400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr8:69882800-69883400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:69882800-69883600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr8:69882800-69884200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr8:69882800-69884200	Enhancers	HSMM	muscle
18	chr8:69883000-69883400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr8:69883000-69883400	Enhancers	Colon Smooth Muscle	Colon
20	chr8:69883000-69883600	Enhancers	Rectal Smooth Muscle	rectum
21	chr8:69883000-69883800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr8:69883200-69884200	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links