Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr8:69872046-69872644	T-47D	breast:	n/a	n/a
2	GATA3	chr8:69872122-69872679	T-47D	breast:	n/a	n/a
3	CTCF	chr8:69872560-69872710	HFF-Myc	foreskin:	n/a	n/a

Variant related genes	Relation type
ENSG00000253658	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11997293	1.00[EUR][1000 genomes]
rs17613199	1.00[EUR][1000 genomes]
rs17613308	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17613869	1.00[AFR][1000 genomes]
rs17691930	1.00[AFR][1000 genomes]
rs17692114	1.00[AFR][1000 genomes]
rs4342609	1.00[EUR][1000 genomes]
rs57544418	0.83[EUR][1000 genomes]
rs59863294	0.98[EUR][1000 genomes]
rs62511334	0.93[EUR][1000 genomes]
rs62514667	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62514669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62514670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62514680	1.00[AFR][1000 genomes]
rs62514681	1.00[AFR][1000 genomes]
rs62514683	1.00[AFR][1000 genomes]
rs62514728	1.00[AFR][1000 genomes]
rs62514730	1.00[AFR][1000 genomes]
rs62514731	1.00[AFR][1000 genomes]
rs7460160	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7822722	0.83[EUR][1000 genomes]
rs7844917	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv33049	chr8:69836813-69943360	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69872600-69872800	Enhancers	Esophagus	oesophagus

Quick Search: