Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16935317	0.94[EUR][1000 genomes]
rs17613869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17614176	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17691930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17692114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62514668	1.00[AFR][1000 genomes]
rs62514669	1.00[AFR][1000 genomes]
rs62514673	0.96[EUR][1000 genomes]
rs62514674	0.96[EUR][1000 genomes]
rs62514675	0.96[EUR][1000 genomes]
rs62514677	0.96[EUR][1000 genomes]
rs62514680	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62514681	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62514683	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62514685	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62514686	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62514687	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62514688	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62514689	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62514728	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62514729	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62514730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62514742	0.90[EUR][1000 genomes]
rs7460160	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv33049	chr8:69836813-69943360	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69879600-69917200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69896000-69897200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:69896000-69897400	Enhancers	HSMM	muscle

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