Variant report

Variant	rs62514680
Chromosome Location	chr8:69888532-69888533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs16935317	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17613869	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17614176	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17691930	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17692096	1.00[ASN][1000 genomes]
rs17692114	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62511327	1.00[ASN][1000 genomes]
rs62511818	1.00[ASN][1000 genomes]
rs62514668	1.00[AFR][1000 genomes]
rs62514669	1.00[AFR][1000 genomes]
rs62514673	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514674	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514675	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514677	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62514685	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62514686	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514687	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514688	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514689	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514728	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514729	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514730	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514731	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62514742	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514744	1.00[ASN][1000 genomes]
rs7350143	1.00[ASN][1000 genomes]
rs7460160	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv33049	chr8:69836813-69943360	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69879600-69917200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69888000-69888600	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr8:69888200-69888600	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr8:69888200-69888600	Active TSS	iPS-15b Cell Line	embryonic stem cell

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