Variant report

Variant	rs62511818
Chromosome Location	chr8:69992814-69992815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1426597	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1426601	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16935317	1.00[ASN][1000 genomes]
rs17613869	1.00[ASN][1000 genomes]
rs17614176	1.00[ASN][1000 genomes]
rs17620983	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17621769	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17621906	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17691930	1.00[ASN][1000 genomes]
rs17692096	1.00[ASN][1000 genomes]
rs17692114	1.00[ASN][1000 genomes]
rs17692996	1.00[AFR][1000 genomes]
rs17693525	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17693837	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17694417	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17694566	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs551097	1.00[AFR][1000 genomes]
rs56288259	0.90[EUR][1000 genomes]
rs587704	1.00[AFR][1000 genomes]
rs62511327	1.00[ASN][1000 genomes]
rs62511794	0.90[EUR][1000 genomes]
rs62511797	0.90[EUR][1000 genomes]
rs62511798	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62511799	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62511816	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62514673	1.00[ASN][1000 genomes]
rs62514674	1.00[ASN][1000 genomes]
rs62514675	1.00[ASN][1000 genomes]
rs62514677	1.00[ASN][1000 genomes]
rs62514680	1.00[ASN][1000 genomes]
rs62514681	1.00[ASN][1000 genomes]
rs62514686	1.00[ASN][1000 genomes]
rs62514687	1.00[ASN][1000 genomes]
rs62514688	1.00[ASN][1000 genomes]
rs62514689	1.00[ASN][1000 genomes]
rs62514728	1.00[ASN][1000 genomes]
rs62514729	1.00[ASN][1000 genomes]
rs62514730	1.00[ASN][1000 genomes]
rs62514742	1.00[ASN][1000 genomes]
rs62514744	1.00[ASN][1000 genomes]
rs649871	1.00[AFR][1000 genomes]
rs72709940	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7350143	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv890987	chr8:69959105-70004698	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69988800-69993600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:69989600-69993400	Enhancers	Osteobl	bone
3	chr8:69990000-69993800	Enhancers	HSMM	muscle
4	chr8:69990600-69993000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:69990600-69993000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:69990800-69993000	Enhancers	NHDF-Ad	bronchial
7	chr8:69991400-69993000	Enhancers	Aorta	Aorta
8	chr8:69991600-69993000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:69991600-69993000	Enhancers	HSMMtube	muscle
10	chr8:69991600-69993000	Enhancers	NH-A	brain
11	chr8:69992800-69993000	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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