Variant report

Variant	rs551097
Chromosome Location	chr8:69999501-69999502
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1426601	1.00[AFR][1000 genomes]
rs17620983	1.00[AFR][1000 genomes]
rs17621906	1.00[AFR][1000 genomes]
rs17692996	1.00[AFR][1000 genomes]
rs17693525	1.00[AFR][1000 genomes]
rs17693837	1.00[AFR][1000 genomes]
rs504115	1.00[EUR][1000 genomes]
rs544085	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs562947	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs587704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62511798	1.00[AFR][1000 genomes]
rs62511799	1.00[AFR][1000 genomes]
rs62511818	1.00[AFR][1000 genomes]
rs649871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72709940	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv890987	chr8:69959105-70004698	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69996000-69999600	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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