Variant report

Variant	rs17692096
Chromosome Location	chr8:69902144-69902145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16935317	1.00[ASN][1000 genomes]
rs17613869	1.00[ASN][1000 genomes]
rs17614176	1.00[ASN][1000 genomes]
rs17691930	1.00[ASN][1000 genomes]
rs17692114	1.00[ASN][1000 genomes]
rs62511327	1.00[ASN][1000 genomes]
rs62511818	1.00[ASN][1000 genomes]
rs62514673	1.00[ASN][1000 genomes]
rs62514674	1.00[ASN][1000 genomes]
rs62514675	1.00[ASN][1000 genomes]
rs62514677	1.00[ASN][1000 genomes]
rs62514680	1.00[ASN][1000 genomes]
rs62514681	1.00[ASN][1000 genomes]
rs62514686	1.00[ASN][1000 genomes]
rs62514687	1.00[ASN][1000 genomes]
rs62514688	1.00[ASN][1000 genomes]
rs62514689	1.00[ASN][1000 genomes]
rs62514728	1.00[ASN][1000 genomes]
rs62514729	1.00[ASN][1000 genomes]
rs62514730	1.00[ASN][1000 genomes]
rs62514742	1.00[ASN][1000 genomes]
rs62514744	1.00[ASN][1000 genomes]
rs7350143	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv33049	chr8:69836813-69943360	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17692096	PHLDA2	trans	lymphoblastoid	RTeQTL
rs17692096	BCLAF1	trans	lymphoblastoid	RTeQTL
rs17692096	MKNK2	trans	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69879600-69917200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69900600-69902200	Enhancers	HUVEC	blood vessel
3	chr8:69901000-69902800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:69901600-69902800	Flanking Active TSS	HSMM	muscle
5	chr8:69901600-69903000	Weak transcription	NHDF-Ad	bronchial
6	chr8:69901800-69902400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
7	chr8:69901800-69903200	Flanking Active TSS	Osteobl	bone
8	chr8:69901800-69903800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:69902000-69902400	Active TSS	HSMMtube	muscle
10	chr8:69902000-69902400	Flanking Active TSS	NH-A	brain
11	chr8:69902000-69902600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:69902000-69902800	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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