Variant report
| Variant | rs62511327 |
|---|---|
| Chromosome Location | chr8:69817047-69817048 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs16935317 | 1.00[ASN][1000 genomes] |
| rs17613869 | 1.00[ASN][1000 genomes] |
| rs17614176 | 1.00[ASN][1000 genomes] |
| rs17691930 | 1.00[ASN][1000 genomes] |
| rs17692096 | 1.00[ASN][1000 genomes] |
| rs17692114 | 1.00[ASN][1000 genomes] |
| rs62511818 | 1.00[ASN][1000 genomes] |
| rs62514673 | 1.00[ASN][1000 genomes] |
| rs62514674 | 1.00[ASN][1000 genomes] |
| rs62514675 | 1.00[ASN][1000 genomes] |
| rs62514677 | 1.00[ASN][1000 genomes] |
| rs62514680 | 1.00[ASN][1000 genomes] |
| rs62514681 | 1.00[ASN][1000 genomes] |
| rs62514686 | 1.00[ASN][1000 genomes] |
| rs62514687 | 1.00[ASN][1000 genomes] |
| rs62514688 | 1.00[ASN][1000 genomes] |
| rs62514689 | 1.00[ASN][1000 genomes] |
| rs62514728 | 1.00[ASN][1000 genomes] |
| rs62514729 | 1.00[ASN][1000 genomes] |
| rs62514730 | 1.00[ASN][1000 genomes] |
| rs62514742 | 1.00[ASN][1000 genomes] |
| rs62514744 | 1.00[ASN][1000 genomes] |
| rs7350143 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033122 | chr8:69728620-69843088 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031633 | chr8:69766575-70322790 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | esv3419713 | chr8:69816498-69820696 | Weak transcription ZNF genes & repeats Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:69808000-69833000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
