Variant report

Variant	rs56288259
Chromosome Location	chr8:69960721-69960722
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1426597	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1426601	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17620983	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17621769	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17621906	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17692996	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17693525	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17693837	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17694417	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17694566	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62511794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62511797	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62511798	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62511799	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62511816	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62511818	0.90[EUR][1000 genomes]
rs72709940	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv890987	chr8:69959105-70004698	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69956200-69961200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr8:69956600-69961000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:69958200-69961000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:69959800-69961000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:69960000-69961000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:69960200-69961200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:69960400-69973600	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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