Variant report

Variant	rs17616012
Chromosome Location	chr2:167926784-167926785
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:167906637..167909557-chr2:167924845..167927554,3	K562	blood:

Extended variants
information (count: 187 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:185)

rs_ID	r²[population]
rs1004767	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes]
rs1004768	1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs1004769	0.80[CEU][hapmap]
rs10211405	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs10497306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10497308	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs10497309	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs10497311	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs10497312	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs10497313	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs10497316	0.91[CEU][hapmap]
rs10497318	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs10497320	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs11510359	0.82[EUR][1000 genomes]
rs1155282	0.84[EUR][1000 genomes]
rs1155283	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs1429931	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1429932	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1479593	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs16853024	0.80[CEU][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs16853028	0.89[EUR][1000 genomes]
rs16853035	0.89[EUR][1000 genomes]
rs16853046	0.84[EUR][1000 genomes]
rs16853048	0.84[EUR][1000 genomes]
rs16853052	0.84[EUR][1000 genomes]
rs16853064	0.84[EUR][1000 genomes]
rs16853066	0.82[EUR][1000 genomes]
rs16853071	0.82[EUR][1000 genomes]
rs16853075	0.82[EUR][1000 genomes]
rs16853103	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs16853124	0.82[EUR][1000 genomes]
rs16853134	0.82[EUR][1000 genomes]
rs16853136	0.82[EUR][1000 genomes]
rs16853138	0.82[EUR][1000 genomes]
rs16853161	0.82[EUR][1000 genomes]
rs16853163	0.82[EUR][1000 genomes]
rs16853164	0.82[EUR][1000 genomes]
rs16853169	0.82[EUR][1000 genomes]
rs16853177	0.82[EUR][1000 genomes]
rs16853179	0.82[EUR][1000 genomes]
rs16853180	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs16853181	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs16853189	0.82[EUR][1000 genomes]
rs16853201	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs17266000	0.84[EUR][1000 genomes]
rs17551389	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17616252	0.88[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17616439	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17616712	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2082097	0.82[EUR][1000 genomes]
rs2303878	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2390515	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2390547	0.82[EUR][1000 genomes]
rs2390548	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs2893038	0.82[EUR][1000 genomes]
rs2893039	0.81[EUR][1000 genomes]
rs2893040	0.81[EUR][1000 genomes]
rs34186219	0.82[EUR][1000 genomes]
rs4270315	0.82[EUR][1000 genomes]
rs4625871	0.81[EUR][1000 genomes]
rs57000446	0.82[EUR][1000 genomes]
rs57050550	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58424143	0.82[EUR][1000 genomes]
rs60361159	0.82[EUR][1000 genomes]
rs6432981	0.82[EUR][1000 genomes]
rs6706115	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6709078	0.81[EUR][1000 genomes]
rs6709079	0.81[EUR][1000 genomes]
rs6709146	0.81[EUR][1000 genomes]
rs6709377	0.81[EUR][1000 genomes]
rs6719812	0.82[EUR][1000 genomes]
rs6724046	0.81[EUR][1000 genomes]
rs6744515	0.82[EUR][1000 genomes]
rs6748606	0.82[EUR][1000 genomes]
rs6748870	0.82[EUR][1000 genomes]
rs6751777	0.82[EUR][1000 genomes]
rs6755389	0.80[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs73017934	0.84[EUR][1000 genomes]
rs73017938	0.84[EUR][1000 genomes]
rs73017942	0.81[EUR][1000 genomes]
rs73017949	0.84[EUR][1000 genomes]
rs73017953	0.84[EUR][1000 genomes]
rs73017957	0.82[EUR][1000 genomes]
rs73017959	0.82[EUR][1000 genomes]
rs73017965	0.82[EUR][1000 genomes]
rs73017968	0.82[EUR][1000 genomes]
rs73017969	0.82[EUR][1000 genomes]
rs73017970	0.82[EUR][1000 genomes]
rs73017971	0.82[EUR][1000 genomes]
rs73017974	0.82[EUR][1000 genomes]
rs73017976	0.82[EUR][1000 genomes]
rs73017977	0.84[EUR][1000 genomes]
rs73017988	0.81[EUR][1000 genomes]
rs73019954	0.81[EUR][1000 genomes]
rs73019959	0.81[EUR][1000 genomes]
rs73019960	0.81[EUR][1000 genomes]
rs73019962	0.81[EUR][1000 genomes]
rs73019965	0.81[EUR][1000 genomes]
rs73019972	0.81[EUR][1000 genomes]
rs73019975	0.81[EUR][1000 genomes]
rs73019977	0.81[EUR][1000 genomes]
rs73019980	0.81[EUR][1000 genomes]
rs73019981	0.81[EUR][1000 genomes]
rs73019982	0.81[EUR][1000 genomes]
rs73019983	0.81[EUR][1000 genomes]
rs73019985	0.81[EUR][1000 genomes]
rs73019986	0.81[EUR][1000 genomes]
rs73019987	0.81[EUR][1000 genomes]
rs73019991	0.81[EUR][1000 genomes]
rs73019993	0.81[EUR][1000 genomes]
rs73020002	0.81[EUR][1000 genomes]
rs73021964	0.81[EUR][1000 genomes]
rs73021968	0.81[EUR][1000 genomes]
rs73021970	0.81[EUR][1000 genomes]
rs73021971	0.81[EUR][1000 genomes]
rs73021975	0.81[EUR][1000 genomes]
rs73021976	0.81[EUR][1000 genomes]
rs73021978	0.81[EUR][1000 genomes]
rs73021981	0.81[EUR][1000 genomes]
rs73021983	0.81[EUR][1000 genomes]
rs73021984	0.81[EUR][1000 genomes]
rs73021985	0.81[EUR][1000 genomes]
rs73021986	0.81[EUR][1000 genomes]
rs73021988	0.82[EUR][1000 genomes]
rs73021990	0.82[EUR][1000 genomes]
rs73021991	0.82[EUR][1000 genomes]
rs73021992	0.82[EUR][1000 genomes]
rs73021994	0.82[EUR][1000 genomes]
rs73022001	0.82[EUR][1000 genomes]
rs73023903	0.82[EUR][1000 genomes]
rs73023904	0.82[EUR][1000 genomes]
rs73023906	0.82[EUR][1000 genomes]
rs73023913	0.82[EUR][1000 genomes]
rs73023916	0.82[EUR][1000 genomes]
rs73023917	0.82[EUR][1000 genomes]
rs73023920	0.81[EUR][1000 genomes]
rs73023984	0.81[EUR][1000 genomes]
rs73023988	0.82[EUR][1000 genomes]
rs73023992	0.82[EUR][1000 genomes]
rs73023994	0.82[EUR][1000 genomes]
rs73023995	0.82[EUR][1000 genomes]
rs73023997	0.82[EUR][1000 genomes]
rs73025706	0.82[EUR][1000 genomes]
rs73025710	0.82[EUR][1000 genomes]
rs73025711	0.82[EUR][1000 genomes]
rs73025716	0.82[EUR][1000 genomes]
rs73025717	0.82[EUR][1000 genomes]
rs73025719	0.82[EUR][1000 genomes]
rs73025722	0.82[EUR][1000 genomes]
rs73025725	0.82[EUR][1000 genomes]
rs73025727	0.82[EUR][1000 genomes]
rs73025729	0.82[EUR][1000 genomes]
rs73025731	0.82[EUR][1000 genomes]
rs73025733	0.82[EUR][1000 genomes]
rs73025735	0.82[EUR][1000 genomes]
rs73025736	0.82[EUR][1000 genomes]
rs73025796	0.82[EUR][1000 genomes]
rs73025798	0.82[EUR][1000 genomes]
rs73027809	0.82[EUR][1000 genomes]
rs73027812	0.82[EUR][1000 genomes]
rs73027816	0.82[EUR][1000 genomes]
rs73027817	0.82[EUR][1000 genomes]
rs73027825	0.82[EUR][1000 genomes]
rs73027827	0.82[EUR][1000 genomes]
rs73027839	0.82[EUR][1000 genomes]
rs73027841	0.82[EUR][1000 genomes]
rs73027843	0.82[EUR][1000 genomes]
rs7556849	0.89[EUR][1000 genomes]
rs7558809	0.81[EUR][1000 genomes]
rs7561839	0.81[EUR][1000 genomes]
rs7565857	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7570780	0.81[EUR][1000 genomes]
rs7577527	0.82[EUR][1000 genomes]
rs7578058	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7583301	0.81[EUR][1000 genomes]
rs7586178	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs7587904	0.81[EUR][1000 genomes]
rs7600229	0.82[EUR][1000 genomes]
rs7604418	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7605024	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7606695	0.81[EUR][1000 genomes]
rs7607000	0.81[EUR][1000 genomes]
rs7609549	0.81[EUR][1000 genomes]
rs989007	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs989008	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17616012	KLF4	trans	brain	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167925400-167927400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:167925800-167927400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:167925800-167928200	Enhancers	HMEC	breast
4	chr2:167926000-167928200	Enhancers	NHEK	skin
5	chr2:167926400-167926800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:167926600-167927000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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