Variant report

Variant	rs17616712
Chromosome Location	chr2:168001133-168001134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr2:168000860-168001489	SK-N-SH	brain:	n/a	chr2:168001219-168001230 chr2:168001445-168001453
2	FOS	chr2:168001088-168001380	MCF10A-Er-Src	breast:	n/a	n/a
3	GATA3	chr2:168000769-168001574	SK-N-SH	brain:	n/a	chr2:168000785-168000793 chr2:168001134-168001144 chr2:168001541-168001550
4	JUN	chr2:168001075-168001401	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr2:168001046-168001316	SK-N-SH	brain:	n/a	n/a
6	TCF12	chr2:168000890-168001557	SK-N-SH	brain:	n/a	n/a
7	EP300	chr2:168001054-168001430	SK-N-SH_RA	brain:	n/a	n/a
8	GATA3	chr2:168000774-168001478	SK-N-SH	brain:	n/a	chr2:168000785-168000793 chr2:168001134-168001144
9	FOSL2	chr2:168000945-168001489	SK-N-SH	brain:	n/a	chr2:168001445-168001453
10	FOS	chr2:168001070-168001355	MCF10A-Er-Src	breast:	n/a	n/a
11	NFIC	chr2:168000892-168001489	SK-N-SH	brain:	n/a	n/a
12	STAT3	chr2:168001024-168001368	MCF10A-Er-Src	breast:	n/a	chr2:168001158-168001169
13	PBX3	chr2:168000911-168001378	SK-N-SH	brain:	n/a	n/a
14	CEBPB	chr2:168000807-168001462	IMR90	lung:	n/a	chr2:168001304-168001315 chr2:168001018-168001029
15	PBX3	chr2:168000825-168001511	SK-N-SH	brain:	n/a	n/a
16	JUND	chr2:168000980-168001516	SK-N-SH	brain:	n/a	chr2:168001219-168001230 chr2:168001445-168001453
17	EP300	chr2:168000934-168001565	SK-N-SH	brain:	n/a	n/a
18	FOS	chr2:168001067-168001367	MCF10A-Er-Src	breast:	n/a	n/a
19	FOS	chr2:168001092-168001345	MCF10A-Er-Src	breast:	n/a	n/a
20	JUND	chr2:168001123-168001277	HepG2	liver:	n/a	chr2:168001219-168001230
21	TCF12	chr2:168000793-168001444	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
XIRP2-AS1	TF binding region

Extended variants
information (count: 190 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:189)

rs_ID	r²[population]
rs1004767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1004768	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1004769	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs10497306	0.80[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10497308	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497309	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497311	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10497312	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10497313	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10497316	0.88[CHB][hapmap]
rs10497318	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10497320	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11510359	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1155282	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1429931	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1429932	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1479593	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16853024	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853028	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853035	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853046	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853048	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853052	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853064	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853066	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853071	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853075	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853103	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs16853124	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16853134	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16853136	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16853138	0.92[EUR][1000 genomes]
rs16853161	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16853163	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16853164	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16853169	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16853177	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16853179	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16853180	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16853181	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16853189	0.92[EUR][1000 genomes]
rs16853201	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17266000	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17551389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17616012	0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17616252	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17616439	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2082097	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2303878	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2390515	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2390547	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2390548	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2893038	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2893039	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2893040	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34186219	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4270315	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4319910	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4625871	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57000446	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57050550	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58424143	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60361159	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6432981	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6706115	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6709078	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6709079	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6709146	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6709377	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6719812	0.92[EUR][1000 genomes]
rs6724046	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6744515	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6748606	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6748870	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6751777	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6755389	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73017934	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73017938	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73017942	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73017949	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73017953	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73017957	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73017959	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73017965	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73017968	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73017969	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73017970	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73017971	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73017974	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73017976	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73017977	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73017988	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73019954	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73019959	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73019960	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73019962	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73019965	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73019970	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73019972	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73019975	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73019977	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73019980	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73019981	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73019982	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73019983	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73019985	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73019986	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73019987	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73019991	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73019993	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73020002	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73021964	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73021968	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73021970	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73021971	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73021975	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73021976	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73021978	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73021981	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73021983	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73021984	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73021985	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73021986	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73021988	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73021990	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73021991	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73021992	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73021994	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73022001	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73023903	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73023904	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73023906	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73023913	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73023916	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73023917	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73023920	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73023984	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73023988	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73023992	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73023994	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73023995	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73023997	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73025706	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73025710	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73025711	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73025716	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73025717	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73025719	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73025722	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73025725	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73025727	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73025729	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73025731	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73025733	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73025735	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73025736	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73025796	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73025798	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73027809	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73027812	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73027816	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73027817	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73027825	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73027827	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73027839	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73027841	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73027843	0.92[EUR][1000 genomes]
rs7556849	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7558809	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7561502	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7561801	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7561812	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7561839	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7565857	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7570780	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7577527	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7578058	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7583301	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7586178	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7587904	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7600229	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7604418	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7605024	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7606695	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7607000	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7609549	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs989007	0.89[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs989008	0.89[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167996200-168001400	Enhancers	Fetal Heart	heart
2	chr2:167996200-168001400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr2:167999200-168001400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:167999400-168002200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:167999600-168002400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:167999800-168001600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:168000200-168005400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr2:168000200-168009600	Weak transcription	Psoas Muscle	Psoas
9	chr2:168000600-168001200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:168000600-168003200	Weak transcription	HSMM	muscle
11	chr2:168000800-168001400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:168000800-168001400	Enhancers	Colon Smooth Muscle	Colon
13	chr2:168001000-168008600	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links