Variant report

Variant	rs7556849
Chromosome Location	chr2:167999082-167999083
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 185 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:184)

rs_ID	r²[population]
rs1004767	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1004768	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1004769	0.82[EUR][1000 genomes]
rs10497306	0.89[EUR][1000 genomes]
rs10497308	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10497309	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10497318	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10497320	0.90[EUR][1000 genomes]
rs11510359	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1155282	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1155283	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1429931	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1429932	0.90[EUR][1000 genomes]
rs1479593	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16853024	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16853028	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16853035	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16853046	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16853048	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16853052	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16853064	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16853066	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16853071	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16853075	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16853124	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16853134	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16853136	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16853138	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16853161	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16853163	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16853164	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16853169	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16853177	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16853179	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16853180	0.90[EUR][1000 genomes]
rs16853181	0.90[EUR][1000 genomes]
rs16853189	0.90[EUR][1000 genomes]
rs16853201	0.90[EUR][1000 genomes]
rs17266000	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17551389	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17616012	0.89[EUR][1000 genomes]
rs17616252	0.90[EUR][1000 genomes]
rs17616439	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17616712	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2082097	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2303878	0.90[EUR][1000 genomes]
rs2390515	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2390547	0.90[EUR][1000 genomes]
rs2390548	0.90[EUR][1000 genomes]
rs2893038	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2893039	0.88[EUR][1000 genomes]
rs2893040	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34186219	0.90[EUR][1000 genomes]
rs4270315	0.90[EUR][1000 genomes]
rs4319910	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4625871	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57000446	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57050550	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58424143	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60361159	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6432981	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6706115	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6709078	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6709079	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6709146	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6709377	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6719812	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6724046	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6744515	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6748606	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6748870	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6751777	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6755389	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73017934	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73017938	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73017942	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73017949	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73017953	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73017957	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73017959	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73017965	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73017968	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73017969	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73017970	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73017971	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73017974	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73017976	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73017977	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73017988	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73019954	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73019959	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73019960	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73019962	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73019965	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73019970	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73019972	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73019975	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73019977	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73019980	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73019981	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73019982	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73019983	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73019985	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73019986	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73019987	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73019991	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73019993	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73020002	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73021964	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73021968	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73021970	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73021971	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73021975	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73021976	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73021978	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73021981	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73021983	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73021984	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73021985	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73021986	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73021988	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73021990	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73021991	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73021992	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73021994	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73022001	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73023903	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73023904	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73023906	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73023913	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73023916	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73023917	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73023920	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73023984	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73023988	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73023992	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73023994	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73023995	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73023997	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73025706	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73025710	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73025711	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73025716	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73025717	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73025719	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73025722	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73025725	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73025727	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73025729	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73025731	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73025733	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73025735	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73025736	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73025796	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73025798	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73027809	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73027812	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73027816	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73027817	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73027825	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73027827	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73027839	0.90[EUR][1000 genomes]
rs73027841	0.90[EUR][1000 genomes]
rs73027843	0.90[EUR][1000 genomes]
rs7558809	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7561502	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7561801	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7561812	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7561839	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7565857	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7570780	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7577527	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7578058	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7583301	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7586178	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7587904	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7600229	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7604418	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7605024	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7606695	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7607000	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7609549	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs989007	0.90[EUR][1000 genomes]
rs989008	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167992200-167999800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:167993800-167999800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:167995000-167999400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:167995000-167999600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:167996200-168001400	Enhancers	Fetal Heart	heart
6	chr2:167996200-168001400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr2:167997000-167999200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:167997200-167999400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr2:167997200-167999600	Weak transcription	Psoas Muscle	Psoas
10	chr2:167997400-167999600	Weak transcription	NHLF	lung
11	chr2:167997400-168001000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr2:167997600-168000800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:167998200-167999800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr2:167998200-167999800	Weak transcription	HSMM	muscle
15	chr2:167998200-168000000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:167998400-167999200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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