Variant report

Variant	rs17621508
Chromosome Location	chr7:40895186-40895187
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10499618	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12155167	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs12701838	0.81[AFR][1000 genomes]
rs17438725	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17439106	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17439448	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17439553	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs17439595	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17529882	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17530234	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17621020	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17621117	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17621345	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs17688549	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs55764442	0.82[ASN][1000 genomes]
rs55834632	0.82[ASN][1000 genomes]
rs55836921	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55992488	0.82[ASN][1000 genomes]
rs6948947	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6970230	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73689863	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689865	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689870	1.00[ASN][1000 genomes]
rs73689875	1.00[ASN][1000 genomes]
rs73689876	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73689877	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830972	chr7:40814709-40945917	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40880200-40905400	Weak transcription	HSMMtube	muscle
2	chr7:40884200-40898800	Weak transcription	NHEK	skin
3	chr7:40884600-40899200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:40889600-40898600	Weak transcription	HMEC	breast
5	chr7:40890000-40896600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:40890000-40919400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:40890200-40906200	Weak transcription	Osteobl	bone
8	chr7:40894000-40898800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:40894600-40896000	Weak transcription	Aorta	Aorta

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