Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10499618	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12154576	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12155167	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17439448	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17439553	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17439595	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17530234	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17621020	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17621117	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17621508	0.82[ASN][1000 genomes]
rs17688549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55641974	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55764442	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55832912	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55834632	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55836921	0.82[ASN][1000 genomes]
rs73689863	0.82[ASN][1000 genomes]
rs73689865	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73689870	0.82[ASN][1000 genomes]
rs73689875	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830972	chr7:40814709-40945917	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40849800-40854600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:40849800-40854800	Weak transcription	Osteobl	bone
3	chr7:40850000-40854600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:40850600-40854800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:40851800-40854600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:40854200-40855000	Enhancers	HMEC	breast
7	chr7:40854400-40855000	Enhancers	NHEK	skin
8	chr7:40854400-40855200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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