Variant report

Variant	rs55764442
Chromosome Location	chr7:40846482-40846483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:40839610..40841601-chr7:40845220..40847169,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10499618	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12154576	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12155167	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17439448	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17439553	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17439595	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17530234	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17621020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17621117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17621508	0.82[ASN][1000 genomes]
rs17688549	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55641974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55832912	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55834632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55836921	0.82[ASN][1000 genomes]
rs55992488	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689863	0.82[ASN][1000 genomes]
rs73689865	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73689870	0.82[ASN][1000 genomes]
rs73689875	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830972	chr7:40814709-40945917	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830973	chr7:40816419-40851594	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40835400-40847800	Weak transcription	Aorta	Aorta
2	chr7:40842400-40847200	Weak transcription	Ovary	ovary
3	chr7:40842400-40847600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:40842400-40847800	Weak transcription	HMEC	breast
5	chr7:40843600-40850000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:40844200-40848600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:40844400-40850600	Enhancers	HSMM	muscle
8	chr7:40844600-40850400	Enhancers	HSMMtube	muscle
9	chr7:40844800-40848200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:40845000-40847600	Weak transcription	NH-A	brain
11	chr7:40845000-40849600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:40845200-40847800	Weak transcription	Colonic Mucosa	Colon
13	chr7:40845400-40847000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr7:40845400-40847200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:40845400-40847800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr7:40845400-40847800	Weak transcription	Hela-S3	cervix
17	chr7:40845400-40850000	Enhancers	NHDF-Ad	bronchial
18	chr7:40845600-40846600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:40845600-40847000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:40845600-40847000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:40845600-40847400	Weak transcription	NHLF	lung
22	chr7:40846000-40847000	Weak transcription	Osteobl	bone
23	chr7:40846400-40849200	Enhancers	Primary B cells from cord blood	blood
24	chr7:40846400-40850000	Enhancers	Primary B cells from peripheral blood	blood

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