Variant report

Variant	rs17623138
Chromosome Location	chr12:33123890-33123891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12811328	0.83[AMR][1000 genomes]
rs12816683	0.83[AMR][1000 genomes]
rs12827254	0.83[AMR][1000 genomes]
rs12827744	0.83[AMR][1000 genomes]
rs12830581	0.83[AMR][1000 genomes]
rs17553487	0.83[AMR][1000 genomes]
rs34018607	0.83[AMR][1000 genomes]
rs34113579	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34202049	0.83[AMR][1000 genomes]
rs34234620	0.83[AMR][1000 genomes]
rs34398102	0.83[AMR][1000 genomes]
rs34506464	0.83[AMR][1000 genomes]
rs34942504	0.83[AMR][1000 genomes]
rs35285975	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35398283	0.83[AMR][1000 genomes]
rs35522863	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35607659	0.83[AMR][1000 genomes]
rs35681913	0.83[AMR][1000 genomes]
rs35687751	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35760728	0.83[AMR][1000 genomes]
rs35848741	0.83[AMR][1000 genomes]
rs35942647	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36042953	0.83[AMR][1000 genomes]
rs4076733	0.83[AMR][1000 genomes]
rs71457664	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71457666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71457669	0.83[AMR][1000 genomes]
rs71457671	0.83[AMR][1000 genomes]
rs71457675	0.83[AMR][1000 genomes]
rs71457678	0.83[AMR][1000 genomes]
rs71457684	0.83[AMR][1000 genomes]
rs73092447	0.91[AFR][1000 genomes]
rs73092465	0.91[AFR][1000 genomes]
rs73092467	0.91[AFR][1000 genomes]
rs73092469	0.91[AFR][1000 genomes]
rs73092471	0.91[AFR][1000 genomes]
rs73092485	0.84[AFR][1000 genomes]
rs73092701	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1054440	chr12:32872999-33150460	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33123400-33124200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:33123400-33124200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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