Variant report

No.	Distal block	Cell Line	Cell type
1	chr12:33103477..33105841-chr12:45619883..45622158,2	MCF-7	breast:
2	chr12:33101880..33104767-chr12:33761445..33763993,2	MCF-7	breast:
3	chr12:33103639..33105480-chr12:33586911..33588541,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11837196	1.00[AMR][1000 genomes]
rs11837863	1.00[AMR][1000 genomes]
rs17623138	0.91[AFR][1000 genomes]
rs4076730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57076983	1.00[AMR][1000 genomes]
rs58326642	1.00[AMR][1000 genomes]
rs71457666	0.91[AFR][1000 genomes]
rs73092441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092461	1.00[EUR][1000 genomes]
rs73092462	1.00[EUR][1000 genomes]
rs73092464	1.00[EUR][1000 genomes]
rs73092465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092481	1.00[EUR][1000 genomes]
rs73092485	0.91[AFR][1000 genomes]
rs73092701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094516	1.00[AMR][1000 genomes]
rs73094523	1.00[AMR][1000 genomes]
rs73094525	1.00[AMR][1000 genomes]
rs73094527	1.00[AMR][1000 genomes]
rs73094584	1.00[AMR][1000 genomes]
rs73094587	1.00[AMR][1000 genomes]
rs73096635	1.00[AMR][1000 genomes]
rs73096690	1.00[AMR][1000 genomes]
rs73098610	1.00[AMR][1000 genomes]
rs73098627	1.00[AMR][1000 genomes]
rs73098635	1.00[AMR][1000 genomes]
rs73098655	1.00[AMR][1000 genomes]
rs73098660	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1054440	chr12:32872999-33150460	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33103200-33103800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:33103600-33104000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: