Variant report
| Variant | rs73098660 |
|---|---|
| Chromosome Location | chr12:33269876-33269877 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:33245520..33247527-chr12:33268044..33270867,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11052481 | 1.00[EUR][1000 genomes] |
| rs11837196 | 1.00[AMR][1000 genomes] |
| rs11837863 | 1.00[AMR][1000 genomes] |
| rs57076983 | 1.00[AMR][1000 genomes] |
| rs57855974 | 1.00[EUR][1000 genomes] |
| rs58326642 | 1.00[AMR][1000 genomes] |
| rs73092465 | 1.00[AMR][1000 genomes] |
| rs73092467 | 1.00[AMR][1000 genomes] |
| rs73092469 | 1.00[AMR][1000 genomes] |
| rs73092471 | 1.00[AMR][1000 genomes] |
| rs73092477 | 1.00[AMR][1000 genomes] |
| rs73092701 | 1.00[AMR][1000 genomes] |
| rs73094516 | 1.00[AMR][1000 genomes] |
| rs73094523 | 1.00[AMR][1000 genomes] |
| rs73094525 | 1.00[AMR][1000 genomes] |
| rs73094527 | 1.00[AMR][1000 genomes] |
| rs73094584 | 1.00[AMR][1000 genomes] |
| rs73094587 | 1.00[AMR][1000 genomes] |
| rs73096635 | 1.00[AMR][1000 genomes] |
| rs73096690 | 1.00[AMR][1000 genomes] |
| rs73098610 | 1.00[AMR][1000 genomes] |
| rs73098627 | 1.00[AMR][1000 genomes] |
| rs73098635 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73098644 | 1.00[EUR][1000 genomes] |
| rs73098655 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73098657 | 1.00[EUR][1000 genomes] |
| rs73098675 | 1.00[EUR][1000 genomes] |
| rs73098683 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530421 | chr12:32825335-33465991 | Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv832367 | chr12:33063644-33298967 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1053849 | chr12:33132909-33279169 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1044931 | chr12:33179957-33307362 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1046565 | chr12:33252166-33294648 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv1035521 | chr12:33265578-33293907 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:33268200-33270400 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr12:33269400-33270400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
