Variant report

Variant	rs58326642
Chromosome Location	chr12:33208121-33208122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11832246	1.00[EUR][1000 genomes]
rs11837196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11837269	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11837863	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1500052	1.00[EUR][1000 genomes]
rs16920527	1.00[EUR][1000 genomes]
rs28656383	1.00[EUR][1000 genomes]
rs4076730	1.00[AMR][1000 genomes]
rs4499080	1.00[EUR][1000 genomes]
rs57076983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58128714	1.00[EUR][1000 genomes]
rs73092441	1.00[AMR][1000 genomes]
rs73092447	1.00[AMR][1000 genomes]
rs73092465	1.00[AMR][1000 genomes]
rs73092467	1.00[AMR][1000 genomes]
rs73092469	1.00[AMR][1000 genomes]
rs73092471	1.00[AMR][1000 genomes]
rs73092477	1.00[AMR][1000 genomes]
rs73092701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73094516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73094523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73094525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73094527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73094584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73094587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73094596	1.00[EUR][1000 genomes]
rs73096635	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73096655	1.00[EUR][1000 genomes]
rs73096686	1.00[AFR][1000 genomes]
rs73096690	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73098610	1.00[AMR][1000 genomes]
rs73098627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73098635	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73098638	1.00[EUR][1000 genomes]
rs73098655	1.00[AMR][1000 genomes]
rs73098660	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1039909	chr12:33132909-33244419	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1053849	chr12:33132909-33279169	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1044931	chr12:33179957-33307362	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33201600-33209200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:33207400-33208400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr12:33207600-33208200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:33207800-33208200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr12:33207800-33208200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr12:33208000-33208200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr12:33208000-33208200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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