Variant report

Variant	rs17631957
Chromosome Location	chr14:81755545-81755546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81749128..81751752-chr14:81752844..81755606,2	K562	blood:
2	chr14:81684202..81687354-chr14:81754240..81756852,3	MCF-7	breast:
3	chr14:81753583..81755549-chr14:81901948..81904132,2	MCF-7	breast:
4	chr14:81747629..81750450-chr14:81752253..81755595,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140022	Chromatin interaction
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1885603	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2081988	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35922586	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4903978	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5025110	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55923946	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7148483	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs8015423	0.81[CHB][hapmap]
rs8019108	0.82[CHB][hapmap]
rs9323698	0.81[CHB][hapmap]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81735600-81760200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr14:81741800-81768400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr14:81742600-81763400	Weak transcription	Psoas Muscle	Psoas
4	chr14:81743800-81778400	Weak transcription	Fetal Kidney	kidney
5	chr14:81744000-81755800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr14:81744400-81758600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr14:81744400-81759200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:81744800-81756800	Weak transcription	K562	blood
9	chr14:81745000-81769600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:81745200-81756000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:81745200-81758600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr14:81749800-81762400	Weak transcription	HSMMtube	muscle
13	chr14:81749800-81771400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr14:81752800-81757200	Strong transcription	HMEC	breast
15	chr14:81754200-81757200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:81754400-81757400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:81754400-81777800	Weak transcription	Ovary	ovary
18	chr14:81754800-81755800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr14:81755000-81769000	Weak transcription	Pancreas	Pancrea
20	chr14:81755200-81755600	ZNF genes & repeats	Fetal Intestine Small	intestine
21	chr14:81755200-81755800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr14:81755200-81756000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:81755200-81756200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
24	chr14:81755200-81756400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:81755200-81756600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:81755200-81756600	ZNF genes & repeats	Fetal Muscle Leg	muscle
27	chr14:81755400-81755600	Enhancers	Spleen	Spleen
28	chr14:81755400-81756400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr14:81755400-81756800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:81755400-81757200	Strong transcription	NHEK	skin
31	chr14:81755400-81757600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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