Variant report

Variant	rs9323698
Chromosome Location	chr14:81746710-81746711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81687510..81689760-chr14:81742676..81747496,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11625861	0.91[CHB][hapmap]
rs17631957	0.81[CHB][hapmap]
rs1885603	0.90[CHD][hapmap]
rs2081988	0.90[CHD][hapmap]
rs4903978	0.88[CHD][hapmap]
rs5025110	0.90[CHD][hapmap]
rs7148483	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8015423	0.81[CHB][hapmap]
rs8019108	0.81[CHB][hapmap]
rs9323699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9944085	0.91[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9323698	C14orf145	cis	parietal	SCAN
rs9323698	STON2	cis	parietal	SCAN

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81729400-81752600	Weak transcription	Stomach Mucosa	stomach
2	chr14:81733200-81753000	Weak transcription	Hela-S3	cervix
3	chr14:81735600-81760200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:81737600-81748000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:81741800-81768400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr14:81742600-81746800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:81742600-81747800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:81742600-81748200	Weak transcription	Fetal Brain Female	brain
9	chr14:81742600-81763400	Weak transcription	Psoas Muscle	Psoas
10	chr14:81743000-81746800	Weak transcription	Brain Germinal Matrix	brain
11	chr14:81743200-81750200	Weak transcription	Brain Substantia Nigra	brain
12	chr14:81743600-81751200	Weak transcription	Brain Anterior Caudate	brain
13	chr14:81743800-81778400	Weak transcription	Fetal Kidney	kidney
14	chr14:81744000-81755800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr14:81744400-81747000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:81744400-81758600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr14:81744400-81759200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:81744600-81747600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr14:81744600-81747600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr14:81744600-81747800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr14:81744600-81748400	Weak transcription	Gastric	stomach
22	chr14:81744800-81746800	Weak transcription	Fetal Intestine Large	intestine
23	chr14:81744800-81746800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr14:81744800-81747200	Weak transcription	Esophagus	oesophagus
25	chr14:81744800-81751000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr14:81744800-81751200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr14:81744800-81752800	Weak transcription	HMEC	breast
28	chr14:81744800-81753800	Weak transcription	Placenta	Placenta
29	chr14:81744800-81756800	Weak transcription	K562	blood
30	chr14:81745000-81747400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr14:81745000-81747600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr14:81745000-81754000	Weak transcription	Fetal Intestine Small	intestine
33	chr14:81745000-81754600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr14:81745000-81755200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:81745000-81755200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr14:81745000-81755200	Weak transcription	Fetal Muscle Leg	muscle
37	chr14:81745000-81755400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr14:81745000-81755400	Weak transcription	Spleen	Spleen
39	chr14:81745000-81769600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr14:81745200-81747400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr14:81745200-81747800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr14:81745200-81748000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr14:81745200-81753200	Weak transcription	NHEK	skin
44	chr14:81745200-81755200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr14:81745200-81755400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr14:81745200-81756000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr14:81745200-81758600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr14:81745400-81751800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr14:81746600-81748600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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