Variant report

Variant	rs17640714
Chromosome Location	chr11:56652022-56652023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12420177	1.00[AFR][1000 genomes]
rs12575372	1.00[AFR][1000 genomes]
rs12788136	1.00[AFR][1000 genomes]
rs12794495	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12798610	1.00[AFR][1000 genomes]
rs12799815	1.00[AFR][1000 genomes]
rs12800063	1.00[AFR][1000 genomes]
rs12801800	0.84[EUR][1000 genomes]
rs17560574	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34941097	1.00[AFR][1000 genomes]
rs35614891	1.00[AFR][1000 genomes]
rs7128426	1.00[AFR][1000 genomes]
rs71495231	1.00[AFR][1000 genomes]
rs7926761	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468577	chr11:56503728-56704042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv555101	chr11:56503728-56704042	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv469960	chr11:56605222-56704042	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1045889	chr11:56624365-56737435	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56644600-56652600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:56645000-56652600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:56647000-56652200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:56651200-56654800	Enhancers	Fetal Intestine Large	intestine
5	chr11:56651600-56652600	Enhancers	A549	lung
6	chr11:56652000-56652200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
7	chr11:56652000-56652800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:56652000-56653200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:56652000-56654800	Enhancers	Fetal Intestine Small	intestine
10	chr11:56652000-56654800	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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