Variant report
Variant | rs12794495 |
---|---|
Chromosome Location | chr11:56681579-56681580 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10501360 | 1.00[ASN][1000 genomes] |
rs11228827 | 1.00[ASN][1000 genomes] |
rs11228869 | 1.00[ASN][1000 genomes] |
rs11228894 | 1.00[ASN][1000 genomes] |
rs12271904 | 1.00[ASN][1000 genomes] |
rs12278474 | 1.00[ASN][1000 genomes] |
rs12293063 | 1.00[ASN][1000 genomes] |
rs12417284 | 1.00[ASN][1000 genomes] |
rs12417291 | 1.00[ASN][1000 genomes] |
rs12418588 | 1.00[ASN][1000 genomes] |
rs12419014 | 1.00[ASN][1000 genomes] |
rs12419097 | 1.00[ASN][1000 genomes] |
rs12419826 | 1.00[ASN][1000 genomes] |
rs12420177 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs12420248 | 1.00[ASN][1000 genomes] |
rs12420411 | 1.00[ASN][1000 genomes] |
rs12420673 | 1.00[ASN][1000 genomes] |
rs12420832 | 1.00[ASN][1000 genomes] |
rs12420925 | 1.00[ASN][1000 genomes] |
rs12421627 | 1.00[ASN][1000 genomes] |
rs12421860 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12422121 | 1.00[ASN][1000 genomes] |
rs12575183 | 1.00[ASN][1000 genomes] |
rs12575372 | 1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12575387 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12575912 | 1.00[ASN][1000 genomes] |
rs12576168 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12576184 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12576591 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12576855 | 1.00[ASN][1000 genomes] |
rs12577285 | 1.00[ASN][1000 genomes] |
rs12785758 | 1.00[ASN][1000 genomes] |
rs12786654 | 1.00[ASN][1000 genomes] |
rs12787770 | 1.00[ASN][1000 genomes] |
rs12788136 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs12789248 | 1.00[ASN][1000 genomes] |
rs12790228 | 1.00[ASN][1000 genomes] |
rs12790623 | 1.00[ASN][1000 genomes] |
rs12791343 | 1.00[ASN][1000 genomes] |
rs12791691 | 1.00[ASN][1000 genomes] |
rs12792425 | 1.00[ASN][1000 genomes] |
rs12793368 | 1.00[ASN][1000 genomes] |
rs12794899 | 1.00[ASN][1000 genomes] |
rs12795509 | 1.00[ASN][1000 genomes] |
rs12797343 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12797771 | 1.00[ASN][1000 genomes] |
rs12798610 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12799815 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs12800063 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs12800319 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12801201 | 1.00[ASN][1000 genomes] |
rs12801391 | 1.00[ASN][1000 genomes] |
rs12801800 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs12803027 | 1.00[ASN][1000 genomes] |
rs12803779 | 1.00[ASN][1000 genomes] |
rs12804100 | 1.00[ASN][1000 genomes] |
rs12804298 | 1.00[ASN][1000 genomes] |
rs12806510 | 1.00[ASN][1000 genomes] |
rs12806959 | 1.00[ASN][1000 genomes] |
rs12808034 | 1.00[ASN][1000 genomes] |
rs12808534 | 1.00[ASN][1000 genomes] |
rs12808890 | 1.00[ASN][1000 genomes] |
rs1631138 | 1.00[ASN][1000 genomes] |
rs17151364 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17151369 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17151375 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17151560 | 1.00[ASN][1000 genomes] |
rs17151564 | 1.00[ASN][1000 genomes] |
rs17151571 | 1.00[ASN][1000 genomes] |
rs17151596 | 1.00[ASN][1000 genomes] |
rs17151610 | 1.00[ASN][1000 genomes] |
rs17151619 | 1.00[ASN][1000 genomes] |
rs17560574 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17640714 | 1.00[AFR][1000 genomes];0.86[EUR][1000 genomes] |
rs1792479 | 1.00[ASN][1000 genomes] |
rs1792523 | 1.00[ASN][1000 genomes] |
rs1792524 | 1.00[ASN][1000 genomes] |
rs1792525 | 1.00[ASN][1000 genomes] |
rs1792526 | 1.00[ASN][1000 genomes] |
rs1792527 | 1.00[ASN][1000 genomes] |
rs1793425 | 1.00[ASN][1000 genomes] |
rs1793429 | 1.00[ASN][1000 genomes] |
rs1793430 | 1.00[ASN][1000 genomes] |
rs1793436 | 1.00[ASN][1000 genomes] |
rs1793441 | 1.00[ASN][1000 genomes] |
rs1793445 | 1.00[ASN][1000 genomes] |
rs1793459 | 1.00[ASN][1000 genomes] |
rs1938754 | 1.00[ASN][1000 genomes] |
rs1941050 | 1.00[ASN][1000 genomes] |
rs1942607 | 1.00[ASN][1000 genomes] |
rs1942608 | 1.00[ASN][1000 genomes] |
rs1942609 | 1.00[ASN][1000 genomes] |
rs1942624 | 1.00[ASN][1000 genomes] |
rs1942628 | 1.00[ASN][1000 genomes] |
rs1945575 | 1.00[ASN][1000 genomes] |
rs1985204 | 1.00[ASN][1000 genomes] |
rs2008410 | 1.00[ASN][1000 genomes] |
rs2957177 | 1.00[ASN][1000 genomes] |
rs3017563 | 1.00[ASN][1000 genomes] |
rs34052386 | 1.00[ASN][1000 genomes] |
rs34175469 | 1.00[ASN][1000 genomes] |
rs34356177 | 1.00[ASN][1000 genomes] |
rs34371962 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34463358 | 1.00[ASN][1000 genomes] |
rs34786579 | 1.00[ASN][1000 genomes] |
rs34941097 | 1.00[AFR][1000 genomes] |
rs35131429 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35358246 | 1.00[ASN][1000 genomes] |
rs35614891 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs35621347 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35775860 | 1.00[ASN][1000 genomes] |
rs35812761 | 1.00[ASN][1000 genomes] |
rs35823562 | 1.00[ASN][1000 genomes] |
rs35894545 | 1.00[ASN][1000 genomes] |
rs35948979 | 1.00[ASN][1000 genomes] |
rs36092341 | 1.00[ASN][1000 genomes] |
rs36114037 | 1.00[ASN][1000 genomes] |
rs4480561 | 1.00[ASN][1000 genomes] |
rs4576837 | 1.00[ASN][1000 genomes] |
rs4628689 | 1.00[ASN][1000 genomes] |
rs55817650 | 1.00[ASN][1000 genomes] |
rs55998005 | 1.00[ASN][1000 genomes] |
rs56008041 | 1.00[ASN][1000 genomes] |
rs7102425 | 1.00[ASN][1000 genomes] |
rs7103223 | 1.00[ASN][1000 genomes] |
rs7113214 | 1.00[ASN][1000 genomes] |
rs7117064 | 1.00[ASN][1000 genomes] |
rs7117618 | 1.00[ASN][1000 genomes] |
rs7128426 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs7130659 | 1.00[ASN][1000 genomes] |
rs71460546 | 1.00[ASN][1000 genomes] |
rs71482293 | 1.00[ASN][1000 genomes] |
rs71482297 | 1.00[ASN][1000 genomes] |
rs71482299 | 1.00[ASN][1000 genomes] |
rs71484408 | 1.00[ASN][1000 genomes] |
rs71484409 | 1.00[ASN][1000 genomes] |
rs71484410 | 1.00[ASN][1000 genomes] |
rs71484411 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs71495231 | 1.00[AFR][1000 genomes] |
rs71495236 | 1.00[ASN][1000 genomes] |
rs730206 | 1.00[ASN][1000 genomes] |
rs744262 | 1.00[ASN][1000 genomes] |
rs7479689 | 1.00[ASN][1000 genomes] |
rs7926761 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs7947850 | 1.00[ASN][1000 genomes] |
rs948722 | 1.00[ASN][1000 genomes] |
rs948723 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv468577 | chr11:56503728-56704042 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv555101 | chr11:56503728-56704042 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
3 | nsv469960 | chr11:56605222-56704042 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv1045889 | chr11:56624365-56737435 | Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv520375 | chr11:56669830-56704042 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:56677600-56683400 | Weak transcription | Fetal Lung | lung |
2 | chr11:56679000-56683800 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
3 | chr11:56679200-56682000 | Weak transcription | NHEK | skin |
4 | chr11:56679200-56685200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |