Variant report

Variant	rs2008410
Chromosome Location	chr11:56685095-56685096
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 152 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs10501360	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11228827	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228869	1.00[ASN][1000 genomes]
rs11228894	1.00[ASN][1000 genomes]
rs12271904	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278474	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12293063	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12417284	1.00[ASN][1000 genomes]
rs12417291	1.00[ASN][1000 genomes]
rs12418588	1.00[ASN][1000 genomes]
rs12419014	1.00[ASN][1000 genomes]
rs12419097	1.00[ASN][1000 genomes]
rs12419826	1.00[ASN][1000 genomes]
rs12420177	1.00[ASN][1000 genomes]
rs12420248	1.00[ASN][1000 genomes]
rs12420411	1.00[ASN][1000 genomes]
rs12420673	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420832	1.00[ASN][1000 genomes]
rs12420925	1.00[ASN][1000 genomes]
rs12421627	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421860	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12422121	1.00[ASN][1000 genomes]
rs12575183	1.00[ASN][1000 genomes]
rs12575372	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575387	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575912	1.00[ASN][1000 genomes]
rs12576168	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576184	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576591	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576855	1.00[ASN][1000 genomes]
rs12577285	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785758	1.00[ASN][1000 genomes]
rs12786654	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12787770	1.00[ASN][1000 genomes]
rs12788136	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12789248	1.00[ASN][1000 genomes]
rs12790228	1.00[ASN][1000 genomes]
rs12790623	1.00[ASN][1000 genomes]
rs12791343	1.00[ASN][1000 genomes]
rs12791691	1.00[ASN][1000 genomes]
rs12792425	1.00[ASN][1000 genomes]
rs12793368	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12794495	1.00[ASN][1000 genomes]
rs12794899	1.00[ASN][1000 genomes]
rs12795509	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12797343	1.00[ASN][1000 genomes]
rs12797771	1.00[ASN][1000 genomes]
rs12798610	1.00[ASN][1000 genomes]
rs12799815	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800063	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800319	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12801201	1.00[ASN][1000 genomes]
rs12801391	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12801800	0.81[AMR][1000 genomes]
rs12803027	1.00[ASN][1000 genomes]
rs12803779	1.00[ASN][1000 genomes]
rs12804100	1.00[ASN][1000 genomes]
rs12804298	1.00[ASN][1000 genomes]
rs12806510	1.00[ASN][1000 genomes]
rs12806959	1.00[ASN][1000 genomes]
rs12808034	1.00[ASN][1000 genomes]
rs12808534	1.00[ASN][1000 genomes]
rs12808890	1.00[ASN][1000 genomes]
rs1631138	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17151364	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151369	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151375	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151560	1.00[ASN][1000 genomes]
rs17151564	1.00[ASN][1000 genomes]
rs17151571	1.00[ASN][1000 genomes]
rs17151596	1.00[ASN][1000 genomes]
rs17151610	1.00[ASN][1000 genomes]
rs17151619	1.00[ASN][1000 genomes]
rs17560574	1.00[ASN][1000 genomes]
rs1792479	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1792523	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1792524	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1792525	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1792526	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1792527	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1793425	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1793429	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1793430	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1793436	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1793441	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1793445	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1793459	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1938754	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941050	1.00[ASN][1000 genomes]
rs1942607	1.00[ASN][1000 genomes]
rs1942608	1.00[ASN][1000 genomes]
rs1942609	1.00[ASN][1000 genomes]
rs1942624	1.00[ASN][1000 genomes]
rs1942628	1.00[ASN][1000 genomes]
rs1945575	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1985204	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2957177	1.00[ASN][1000 genomes]
rs3017563	1.00[ASN][1000 genomes]
rs34052386	1.00[ASN][1000 genomes]
rs34175469	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34356177	1.00[ASN][1000 genomes]
rs34371962	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34463358	1.00[ASN][1000 genomes]
rs34786579	1.00[ASN][1000 genomes]
rs35131429	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35358246	1.00[ASN][1000 genomes]
rs35614891	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35621347	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35775860	1.00[ASN][1000 genomes]
rs35812761	1.00[ASN][1000 genomes]
rs35823562	1.00[ASN][1000 genomes]
rs35894545	1.00[ASN][1000 genomes]
rs35948979	1.00[ASN][1000 genomes]
rs36092341	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36114037	1.00[ASN][1000 genomes]
rs4412767	0.84[AMR][1000 genomes]
rs4480561	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4576837	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4628689	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4633488	0.87[AMR][1000 genomes]
rs55817650	1.00[ASN][1000 genomes]
rs55998005	1.00[ASN][1000 genomes]
rs56008041	1.00[ASN][1000 genomes]
rs61739878	0.84[AFR][1000 genomes]
rs7102425	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7103223	1.00[ASN][1000 genomes]
rs7113214	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7117064	1.00[ASN][1000 genomes]
rs7117618	1.00[ASN][1000 genomes]
rs7128426	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7130659	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71460546	1.00[ASN][1000 genomes]
rs71482293	1.00[ASN][1000 genomes]
rs71482297	1.00[ASN][1000 genomes]
rs71482299	1.00[ASN][1000 genomes]
rs71484408	1.00[ASN][1000 genomes]
rs71484409	1.00[ASN][1000 genomes]
rs71484410	1.00[ASN][1000 genomes]
rs71484411	1.00[ASN][1000 genomes]
rs71495236	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs730206	1.00[ASN][1000 genomes]
rs744262	1.00[ASN][1000 genomes]
rs7479689	1.00[ASN][1000 genomes]
rs7926761	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7947850	1.00[ASN][1000 genomes]
rs948722	1.00[ASN][1000 genomes]
rs948723	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468577	chr11:56503728-56704042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv555101	chr11:56503728-56704042	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv469960	chr11:56605222-56704042	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1045889	chr11:56624365-56737435	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv520375	chr11:56669830-56704042	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56679200-56685200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:56683400-56686600	Enhancers	Fetal Lung	lung
3	chr11:56684200-56685200	Weak transcription	A549	lung
4	chr11:56684800-56686000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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