Variant report

Variant	rs71484411
Chromosome Location	chr11:56860396-56860397
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 211 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:208)

rs_ID	r²[population]
rs10501360	1.00[ASN][1000 genomes]
rs11228869	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11228894	1.00[ASN][1000 genomes]
rs1124846	1.00[AFR][1000 genomes]
rs12271904	1.00[ASN][1000 genomes]
rs12278474	1.00[ASN][1000 genomes]
rs12293063	1.00[ASN][1000 genomes]
rs12417284	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12417291	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12417609	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12417875	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12418588	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12419014	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12419097	1.00[ASN][1000 genomes]
rs12419826	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12420177	1.00[ASN][1000 genomes]
rs12420248	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12420271	1.00[AFR][1000 genomes]
rs12420411	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12420673	1.00[ASN][1000 genomes]
rs12420832	1.00[ASN][1000 genomes]
rs12420925	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12421627	1.00[ASN][1000 genomes]
rs12421860	1.00[ASN][1000 genomes]
rs12422121	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12574210	0.92[EUR][1000 genomes]
rs12575183	1.00[ASN][1000 genomes]
rs12575372	1.00[ASN][1000 genomes]
rs12575387	1.00[ASN][1000 genomes]
rs12575912	1.00[ASN][1000 genomes]
rs12576168	1.00[ASN][1000 genomes]
rs12576184	1.00[ASN][1000 genomes]
rs12576471	1.00[AFR][1000 genomes]
rs12576591	1.00[ASN][1000 genomes]
rs12576855	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12577285	1.00[ASN][1000 genomes]
rs12785758	1.00[ASN][1000 genomes]
rs12785770	1.00[AFR][1000 genomes]
rs12786654	1.00[ASN][1000 genomes]
rs12787770	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12788046	1.00[AFR][1000 genomes]
rs12788136	1.00[ASN][1000 genomes]
rs12789248	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12789789	1.00[AFR][1000 genomes]
rs12790228	1.00[ASN][1000 genomes]
rs12790623	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12791149	0.92[EUR][1000 genomes]
rs12791343	1.00[ASN][1000 genomes]
rs12791691	1.00[ASN][1000 genomes]
rs12792413	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12792425	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12793368	1.00[ASN][1000 genomes]
rs12794495	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794899	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12795509	1.00[ASN][1000 genomes]
rs12797343	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797771	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12798610	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800063	1.00[ASN][1000 genomes]
rs12800196	1.00[AFR][1000 genomes]
rs12800319	1.00[ASN][1000 genomes]
rs12800402	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12801065	1.00[AFR][1000 genomes]
rs12801201	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12801800	0.85[EUR][1000 genomes]
rs12803027	1.00[ASN][1000 genomes]
rs12803405	1.00[AFR][1000 genomes]
rs12803779	1.00[ASN][1000 genomes]
rs12804100	1.00[ASN][1000 genomes]
rs12804298	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12806510	1.00[ASN][1000 genomes]
rs12806656	1.00[AFR][1000 genomes]
rs12806959	1.00[ASN][1000 genomes]
rs12806978	1.00[AFR][1000 genomes]
rs12807925	1.00[AFR][1000 genomes]
rs12808034	1.00[ASN][1000 genomes]
rs12808495	1.00[AFR][1000 genomes]
rs12808534	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12808890	1.00[ASN][1000 genomes]
rs1631138	1.00[ASN][1000 genomes]
rs17145552	1.00[AFR][1000 genomes]
rs17145556	1.00[AFR][1000 genomes]
rs17151364	1.00[ASN][1000 genomes]
rs17151369	1.00[ASN][1000 genomes]
rs17151375	1.00[ASN][1000 genomes]
rs17151560	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17151564	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17151571	1.00[ASN][1000 genomes]
rs17151596	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17151610	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17151619	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17151664	1.00[AFR][1000 genomes]
rs17151671	1.00[AFR][1000 genomes]
rs17564188	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17651297	1.00[AFR][1000 genomes]
rs17651573	1.00[AFR][1000 genomes]
rs1792479	1.00[ASN][1000 genomes]
rs1792523	1.00[ASN][1000 genomes]
rs1792524	1.00[ASN][1000 genomes]
rs1792525	1.00[ASN][1000 genomes]
rs1792526	1.00[ASN][1000 genomes]
rs1792527	1.00[ASN][1000 genomes]
rs1793425	1.00[ASN][1000 genomes]
rs1793429	1.00[ASN][1000 genomes]
rs1793430	1.00[ASN][1000 genomes]
rs1793436	1.00[ASN][1000 genomes]
rs1793441	1.00[ASN][1000 genomes]
rs1793445	1.00[ASN][1000 genomes]
rs1793459	1.00[ASN][1000 genomes]
rs1806823	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1938754	1.00[ASN][1000 genomes]
rs1941034	1.00[AFR][1000 genomes]
rs1941050	1.00[ASN][1000 genomes]
rs1941054	1.00[AFR][1000 genomes]
rs1942607	1.00[ASN][1000 genomes]
rs1942608	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1942609	1.00[ASN][1000 genomes]
rs1942622	0.92[EUR][1000 genomes]
rs1942624	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1942628	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1943485	1.00[AFR][1000 genomes]
rs1945575	1.00[ASN][1000 genomes]
rs1985204	1.00[ASN][1000 genomes]
rs2008410	1.00[ASN][1000 genomes]
rs2077188	1.00[AFR][1000 genomes]
rs2156457	1.00[AFR][1000 genomes]
rs2156458	1.00[AFR][1000 genomes]
rs2156460	1.00[AFR][1000 genomes]
rs2212608	1.00[AFR][1000 genomes]
rs2957177	1.00[ASN][1000 genomes]
rs2957181	0.92[EUR][1000 genomes]
rs3017563	1.00[ASN][1000 genomes]
rs34052386	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34175469	1.00[ASN][1000 genomes]
rs34356177	1.00[ASN][1000 genomes]
rs34371962	1.00[ASN][1000 genomes]
rs34458685	1.00[AFR][1000 genomes]
rs34463358	1.00[ASN][1000 genomes]
rs34544917	1.00[AFR][1000 genomes]
rs34704777	1.00[AFR][1000 genomes]
rs34742309	1.00[AFR][1000 genomes]
rs34769912	1.00[AFR][1000 genomes]
rs34786579	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34850337	1.00[AFR][1000 genomes]
rs34985061	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs35131429	1.00[ASN][1000 genomes]
rs35358246	1.00[ASN][1000 genomes]
rs35536636	1.00[AFR][1000 genomes]
rs35614891	1.00[ASN][1000 genomes]
rs35621347	1.00[ASN][1000 genomes]
rs35775860	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35812761	1.00[ASN][1000 genomes]
rs35823562	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35845551	1.00[AFR][1000 genomes]
rs35894545	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35948979	1.00[ASN][1000 genomes]
rs35980006	1.00[AFR][1000 genomes]
rs36090449	1.00[AFR][1000 genomes]
rs36092341	1.00[ASN][1000 genomes]
rs36114037	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4480561	1.00[ASN][1000 genomes]
rs4550240	0.92[EUR][1000 genomes]
rs4576837	1.00[ASN][1000 genomes]
rs4628689	1.00[ASN][1000 genomes]
rs55817650	1.00[ASN][1000 genomes]
rs55998005	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56008041	1.00[ASN][1000 genomes]
rs7102425	1.00[ASN][1000 genomes]
rs7103223	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7113214	1.00[ASN][1000 genomes]
rs7117064	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7117618	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7128426	1.00[ASN][1000 genomes]
rs7130659	1.00[ASN][1000 genomes]
rs71460546	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71482293	1.00[ASN][1000 genomes]
rs71482297	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71482299	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71484408	1.00[ASN][1000 genomes]
rs71484409	1.00[ASN][1000 genomes]
rs71484410	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484414	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs71484415	0.92[EUR][1000 genomes]
rs71484416	0.92[EUR][1000 genomes]
rs71484419	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs71484422	1.00[AFR][1000 genomes]
rs71484424	1.00[AFR][1000 genomes]
rs71484425	1.00[AFR][1000 genomes]
rs71484428	1.00[AFR][1000 genomes]
rs71484429	1.00[AFR][1000 genomes]
rs71484430	1.00[AFR][1000 genomes]
rs71484431	1.00[AFR][1000 genomes]
rs71484432	1.00[AFR][1000 genomes]
rs71484433	1.00[AFR][1000 genomes]
rs71484434	1.00[AFR][1000 genomes]
rs71484435	1.00[AFR][1000 genomes]
rs71484436	1.00[AFR][1000 genomes]
rs71495236	1.00[ASN][1000 genomes]
rs717117	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs730206	1.00[ASN][1000 genomes]
rs744262	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs746885	1.00[AFR][1000 genomes]
rs7479689	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7926761	1.00[ASN][1000 genomes]
rs7947850	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs948722	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs948723	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs948843	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56856000-56861400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:56856000-56864800	Weak transcription	Fetal Lung	lung

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