Variant report

Variant	rs12800402
Chromosome Location	chr11:56887437-56887438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:56885086..56888597-chr11:56892497..56898874,6	K562	blood:

Extended variants
information (count: 140 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs11228869	1.00[AFR][1000 genomes]
rs1124846	1.00[AFR][1000 genomes]
rs12417284	1.00[AFR][1000 genomes]
rs12417291	1.00[AFR][1000 genomes]
rs12417609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418588	1.00[AFR][1000 genomes]
rs12419014	1.00[AFR][1000 genomes]
rs12419826	1.00[AFR][1000 genomes]
rs12420248	1.00[AFR][1000 genomes]
rs12420271	1.00[AFR][1000 genomes]
rs12420925	1.00[AFR][1000 genomes]
rs12574210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12576471	1.00[AFR][1000 genomes]
rs12576855	1.00[AFR][1000 genomes]
rs12785770	1.00[AFR][1000 genomes]
rs12786177	0.82[EUR][1000 genomes]
rs12786396	1.00[AFR][1000 genomes]
rs12787770	1.00[AFR][1000 genomes]
rs12788046	1.00[AFR][1000 genomes]
rs12789248	1.00[AFR][1000 genomes]
rs12789789	1.00[AFR][1000 genomes]
rs12790623	1.00[AFR][1000 genomes]
rs12791149	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12792413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12792425	1.00[AFR][1000 genomes]
rs12794899	1.00[AFR][1000 genomes]
rs12797343	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12799582	1.00[AFR][1000 genomes]
rs12800196	1.00[AFR][1000 genomes]
rs12801000	1.00[AFR][1000 genomes]
rs12801065	1.00[AFR][1000 genomes]
rs12801201	1.00[AFR][1000 genomes]
rs12802096	1.00[AFR][1000 genomes]
rs12803405	1.00[AFR][1000 genomes]
rs12804022	1.00[AFR][1000 genomes]
rs12804298	1.00[AFR][1000 genomes]
rs12806656	1.00[AFR][1000 genomes]
rs12806978	1.00[AFR][1000 genomes]
rs12807593	1.00[AFR][1000 genomes]
rs12807925	1.00[AFR][1000 genomes]
rs12808193	1.00[AFR][1000 genomes]
rs12808495	1.00[AFR][1000 genomes]
rs12808534	1.00[AFR][1000 genomes]
rs12808784	1.00[AFR][1000 genomes]
rs12808788	1.00[AFR][1000 genomes]
rs17145552	1.00[AFR][1000 genomes]
rs17145556	1.00[AFR][1000 genomes]
rs17151560	1.00[AFR][1000 genomes]
rs17151564	1.00[AFR][1000 genomes]
rs17151596	1.00[AFR][1000 genomes]
rs17151610	1.00[AFR][1000 genomes]
rs17151623	0.83[EUR][1000 genomes]
rs17151664	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs17151671	1.00[AFR][1000 genomes]
rs17564188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17651297	1.00[AFR][1000 genomes]
rs17651573	1.00[AFR][1000 genomes]
rs1806823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941034	1.00[AFR][1000 genomes]
rs1941054	1.00[AFR][1000 genomes]
rs1942608	1.00[AFR][1000 genomes]
rs1942622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942624	1.00[AFR][1000 genomes]
rs1942628	1.00[AFR][1000 genomes]
rs1943485	1.00[AFR][1000 genomes]
rs2077188	1.00[AFR][1000 genomes]
rs2156457	1.00[AFR][1000 genomes]
rs2156458	1.00[AFR][1000 genomes]
rs2156460	1.00[AFR][1000 genomes]
rs2212608	1.00[AFR][1000 genomes]
rs2957181	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017562	0.83[EUR][1000 genomes]
rs34052386	1.00[AFR][1000 genomes]
rs34069781	1.00[AFR][1000 genomes]
rs34076116	1.00[AFR][1000 genomes]
rs34177110	1.00[AFR][1000 genomes]
rs34458685	1.00[AFR][1000 genomes]
rs34498883	1.00[AFR][1000 genomes]
rs34505638	1.00[AFR][1000 genomes]
rs34544917	1.00[AFR][1000 genomes]
rs34704777	1.00[AFR][1000 genomes]
rs34742309	1.00[AFR][1000 genomes]
rs34769912	1.00[AFR][1000 genomes]
rs34786579	1.00[AFR][1000 genomes]
rs34850337	1.00[AFR][1000 genomes]
rs34905018	1.00[AFR][1000 genomes]
rs34985061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35272228	1.00[AFR][1000 genomes]
rs35366909	1.00[AFR][1000 genomes]
rs35388927	1.00[AFR][1000 genomes]
rs35536636	1.00[AFR][1000 genomes]
rs35721601	1.00[AFR][1000 genomes]
rs35775860	1.00[AFR][1000 genomes]
rs35818468	1.00[AFR][1000 genomes]
rs35823562	1.00[AFR][1000 genomes]
rs35845551	1.00[AFR][1000 genomes]
rs35950335	1.00[AFR][1000 genomes]
rs35980006	1.00[AFR][1000 genomes]
rs35991636	1.00[AFR][1000 genomes]
rs36090449	1.00[AFR][1000 genomes]
rs36114037	1.00[AFR][1000 genomes]
rs4550240	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55998005	1.00[AFR][1000 genomes]
rs7103223	1.00[AFR][1000 genomes]
rs7117064	1.00[AFR][1000 genomes]
rs7117618	1.00[AFR][1000 genomes]
rs71460546	1.00[AFR][1000 genomes]
rs71482297	1.00[AFR][1000 genomes]
rs71482299	1.00[AFR][1000 genomes]
rs71484411	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs71484414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71484422	1.00[AFR][1000 genomes]
rs71484424	1.00[AFR][1000 genomes]
rs71484425	1.00[AFR][1000 genomes]
rs71484428	1.00[AFR][1000 genomes]
rs71484429	1.00[AFR][1000 genomes]
rs71484430	1.00[AFR][1000 genomes]
rs71484431	1.00[AFR][1000 genomes]
rs71484432	1.00[AFR][1000 genomes]
rs71484433	1.00[AFR][1000 genomes]
rs71484434	1.00[AFR][1000 genomes]
rs71484435	1.00[AFR][1000 genomes]
rs71484436	1.00[AFR][1000 genomes]
rs71484437	1.00[AFR][1000 genomes]
rs71484441	1.00[AFR][1000 genomes]
rs717117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744262	1.00[AFR][1000 genomes]
rs746885	1.00[AFR][1000 genomes]
rs7479689	1.00[AFR][1000 genomes]
rs7947850	1.00[AFR][1000 genomes]
rs948722	1.00[AFR][1000 genomes]
rs948723	1.00[AFR][1000 genomes]
rs948843	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56885000-56887600	Weak transcription	Placenta	Placenta
2	chr11:56886600-56888200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:56886600-56891000	Weak transcription	Right Atrium	heart
4	chr11:56886800-56889400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:56886800-56890400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:56887000-56889200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:56887400-56887800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:56887400-56888400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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