Variant report

Variant	rs17145552
Chromosome Location	chr11:56968006-56968007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 162 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs1124846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417284	1.00[AFR][1000 genomes]
rs12417291	1.00[AFR][1000 genomes]
rs12417609	1.00[AFR][1000 genomes]
rs12417875	1.00[AFR][1000 genomes]
rs12418588	1.00[AFR][1000 genomes]
rs12419014	1.00[AFR][1000 genomes]
rs12419826	1.00[AFR][1000 genomes]
rs12420248	1.00[AFR][1000 genomes]
rs12420925	1.00[AFR][1000 genomes]
rs12576471	1.00[AFR][1000 genomes]
rs12576855	1.00[AFR][1000 genomes]
rs12785770	1.00[AFR][1000 genomes]
rs12786396	1.00[AFR][1000 genomes]
rs12787728	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs12788046	1.00[AFR][1000 genomes]
rs12788466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12789248	1.00[AFR][1000 genomes]
rs12789789	1.00[AFR][1000 genomes]
rs12790623	1.00[AFR][1000 genomes]
rs12792413	1.00[AFR][1000 genomes]
rs12792425	1.00[AFR][1000 genomes]
rs12794899	1.00[AFR][1000 genomes]
rs12797343	1.00[AFR][1000 genomes]
rs12798121	1.00[MEX][hapmap];1.00[AFR][1000 genomes]
rs12799582	1.00[AFR][1000 genomes]
rs12800182	1.00[MEX][hapmap];1.00[AFR][1000 genomes]
rs12800196	1.00[AFR][1000 genomes]
rs12800402	1.00[AFR][1000 genomes]
rs12801000	1.00[AFR][1000 genomes]
rs12801065	1.00[AFR][1000 genomes]
rs12801201	1.00[AFR][1000 genomes]
rs12802096	1.00[AFR][1000 genomes]
rs12803405	1.00[AFR][1000 genomes]
rs12804022	1.00[AFR][1000 genomes]
rs12804298	1.00[AFR][1000 genomes]
rs12806656	1.00[AFR][1000 genomes]
rs12806978	1.00[AFR][1000 genomes]
rs12807593	1.00[AFR][1000 genomes]
rs12807925	1.00[AFR][1000 genomes]
rs12808193	1.00[AFR][1000 genomes]
rs12808495	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12808534	1.00[AFR][1000 genomes]
rs12808784	1.00[AFR][1000 genomes]
rs12808788	1.00[AFR][1000 genomes]
rs17145556	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17151560	1.00[AFR][1000 genomes]
rs17151564	1.00[AFR][1000 genomes]
rs17151596	1.00[AFR][1000 genomes]
rs17151610	1.00[AFR][1000 genomes]
rs17151664	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs17151671	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs17151703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151841	1.00[MEX][hapmap];1.00[AFR][1000 genomes]
rs17564188	1.00[AFR][1000 genomes]
rs17651297	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17651573	1.00[AFR][1000 genomes]
rs1806823	1.00[AFR][1000 genomes]
rs1939488	1.00[CEU][hapmap]
rs1941034	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1941037	0.97[EUR][1000 genomes]
rs1941054	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1941055	0.95[EUR][1000 genomes]
rs1941056	0.95[EUR][1000 genomes]
rs1942624	1.00[AFR][1000 genomes]
rs1942628	1.00[AFR][1000 genomes]
rs1943477	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943478	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943485	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077188	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2156457	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2156458	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2156460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2212608	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2860252	0.97[EUR][1000 genomes]
rs2860498	0.97[EUR][1000 genomes]
rs2860508	0.97[EUR][1000 genomes]
rs2866128	0.97[EUR][1000 genomes]
rs2866129	0.97[EUR][1000 genomes]
rs2960562	0.97[EUR][1000 genomes]
rs3017315	1.00[EUR][1000 genomes]
rs3017316	0.97[EUR][1000 genomes]
rs3017569	0.97[EUR][1000 genomes]
rs3017572	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017576	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34014874	1.00[AFR][1000 genomes]
rs34052386	1.00[AFR][1000 genomes]
rs34069781	1.00[AFR][1000 genomes]
rs34076116	1.00[AFR][1000 genomes]
rs34177110	1.00[AFR][1000 genomes]
rs34458685	1.00[AFR][1000 genomes]
rs34498883	1.00[AFR][1000 genomes]
rs34505638	1.00[AFR][1000 genomes]
rs34544917	1.00[AFR][1000 genomes]
rs34572680	1.00[AFR][1000 genomes]
rs34704777	1.00[AFR][1000 genomes]
rs34742309	1.00[AFR][1000 genomes]
rs34754262	1.00[AFR][1000 genomes]
rs34761603	1.00[AFR][1000 genomes]
rs34769912	1.00[AFR][1000 genomes]
rs34786579	1.00[AFR][1000 genomes]
rs34850337	1.00[AFR][1000 genomes]
rs34905018	1.00[AFR][1000 genomes]
rs34960942	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34985061	1.00[AFR][1000 genomes]
rs35272228	1.00[AFR][1000 genomes]
rs35284031	1.00[MEX][hapmap];1.00[AFR][1000 genomes]
rs35366909	1.00[AFR][1000 genomes]
rs35388927	1.00[AFR][1000 genomes]
rs35536636	1.00[AFR][1000 genomes]
rs35566323	1.00[AFR][1000 genomes]
rs35707583	1.00[AFR][1000 genomes]
rs35721601	1.00[AFR][1000 genomes]
rs35775860	1.00[AFR][1000 genomes]
rs35818468	1.00[AFR][1000 genomes]
rs35823562	1.00[AFR][1000 genomes]
rs35845551	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35943801	1.00[AFR][1000 genomes]
rs35950335	1.00[AFR][1000 genomes]
rs35980006	1.00[AFR][1000 genomes]
rs35991636	1.00[AFR][1000 genomes]
rs36090449	1.00[AFR][1000 genomes]
rs36114037	1.00[AFR][1000 genomes]
rs61058019	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591419	1.00[CEU][hapmap]
rs7103223	1.00[AFR][1000 genomes]
rs7103802	0.97[EUR][1000 genomes]
rs7117064	1.00[AFR][1000 genomes]
rs7117618	1.00[AFR][1000 genomes]
rs71460546	1.00[AFR][1000 genomes]
rs71482297	1.00[AFR][1000 genomes]
rs71482299	1.00[AFR][1000 genomes]
rs71484411	1.00[AFR][1000 genomes]
rs71484414	1.00[AFR][1000 genomes]
rs71484419	1.00[AFR][1000 genomes]
rs71484422	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71484424	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484425	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484428	1.00[AFR][1000 genomes]
rs71484429	1.00[AFR][1000 genomes]
rs71484430	1.00[AFR][1000 genomes]
rs71484431	1.00[AFR][1000 genomes]
rs71484432	1.00[AFR][1000 genomes]
rs71484433	1.00[AFR][1000 genomes]
rs71484434	1.00[AFR][1000 genomes]
rs71484435	1.00[AFR][1000 genomes]
rs71484436	1.00[AFR][1000 genomes]
rs71484437	1.00[AFR][1000 genomes]
rs71484441	1.00[AFR][1000 genomes]
rs71484444	1.00[AFR][1000 genomes]
rs71484445	1.00[AFR][1000 genomes]
rs71484446	1.00[AFR][1000 genomes]
rs717117	1.00[AFR][1000 genomes]
rs744262	1.00[AFR][1000 genomes]
rs746885	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7479689	1.00[AFR][1000 genomes]
rs948722	1.00[AFR][1000 genomes]
rs948723	1.00[AFR][1000 genomes]
rs948843	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56950200-56969800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:56959800-56968200	Weak transcription	Right Atrium	heart
3	chr11:56960000-56969600	Weak transcription	Psoas Muscle	Psoas
4	chr11:56963400-56970600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:56964200-56968400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:56965600-56968200	Weak transcription	Adipose Nuclei	Adipose
7	chr11:56965600-56968200	Weak transcription	Left Ventricle	heart
8	chr11:56965600-56968600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:56965600-56968800	Weak transcription	Right Ventricle	heart
10	chr11:56967200-56968200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:56967200-56970000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:56967200-56973000	Enhancers	Fetal Lung	lung
13	chr11:56967400-56968600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr11:56967400-56973600	Enhancers	Fetal Stomach	stomach
15	chr11:56967600-56968800	Enhancers	Small Intestine	intestine
16	chr11:56967800-56968800	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:56967800-56973600	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links