Variant report

Variant	rs1943478
Chromosome Location	chr11:56973848-56973849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1124846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12787728	1.00[CEU][hapmap]
rs12788466	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808495	0.95[EUR][1000 genomes]
rs17145552	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17145556	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17151664	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17151671	0.92[EUR][1000 genomes]
rs17151703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17651297	0.95[EUR][1000 genomes]
rs1939488	1.00[CEU][hapmap]
rs1941034	0.95[EUR][1000 genomes]
rs1941037	0.92[EUR][1000 genomes]
rs1941054	0.92[EUR][1000 genomes]
rs1941055	0.90[EUR][1000 genomes]
rs1941056	0.90[EUR][1000 genomes]
rs1943477	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943485	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943488	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077188	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2156457	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2156458	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2156460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2212608	0.92[EUR][1000 genomes]
rs2860252	0.92[EUR][1000 genomes]
rs2860397	0.82[YRI][hapmap]
rs2860498	0.92[EUR][1000 genomes]
rs2860508	0.92[EUR][1000 genomes]
rs2866128	0.92[EUR][1000 genomes]
rs2866129	0.92[EUR][1000 genomes]
rs2960562	0.92[EUR][1000 genomes]
rs3017315	0.95[EUR][1000 genomes]
rs3017316	0.92[EUR][1000 genomes]
rs3017569	0.92[EUR][1000 genomes]
rs3017572	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017576	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34960942	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35845551	0.95[EUR][1000 genomes]
rs61058019	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591419	1.00[CEU][hapmap]
rs7103802	0.92[EUR][1000 genomes]
rs71484422	0.95[EUR][1000 genomes]
rs71484424	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484425	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746885	0.92[EUR][1000 genomes]
rs948843	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56968200-56974400	Enhancers	Fetal Muscle Trunk	muscle
2	chr11:56968200-56975200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
3	chr11:56970800-56974000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:56971200-56974000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:56971200-56978000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:56971600-56974800	Weak transcription	Right Atrium	heart
7	chr11:56971600-56974800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:56972200-56974000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr11:56972600-56974200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:56972800-56974200	Weak transcription	Spleen	Spleen
11	chr11:56973000-56974400	Weak transcription	Left Ventricle	heart
12	chr11:56973000-56977800	Weak transcription	Fetal Lung	lung
13	chr11:56973400-56974000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:56973400-56977000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:56973400-56978000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:56973600-56974400	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:56973600-56977600	Weak transcription	Fetal Stomach	stomach
18	chr11:56973600-56978000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:56973600-56978000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:56973600-56980200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:56973800-56974200	Bivalent Enhancer	Placenta	Placenta
22	chr11:56973800-56974400	Enhancers	Lung	lung
23	chr11:56973800-56974800	Enhancers	Right Ventricle	heart
24	chr11:56973800-56978000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:56973800-56978000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:56973800-56978200	Weak transcription	H9 Cell Line	embryonic stem cell

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