Variant report

Variant	rs34960942
Chromosome Location	chr11:56977923-56977924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:56950383..56952572-chr11:56977333..56980182,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1124846	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12788466	0.95[EUR][1000 genomes]
rs12808495	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17145552	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17145556	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17151664	0.90[EUR][1000 genomes]
rs17151671	0.92[EUR][1000 genomes]
rs17151703	0.92[EUR][1000 genomes]
rs17651297	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941034	0.95[EUR][1000 genomes]
rs1941037	0.92[EUR][1000 genomes]
rs1941054	0.92[EUR][1000 genomes]
rs1941055	0.90[EUR][1000 genomes]
rs1941056	0.90[EUR][1000 genomes]
rs1943477	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1943478	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1943485	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1943488	0.92[EUR][1000 genomes]
rs2077188	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2156457	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2156458	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2156460	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2212608	0.92[EUR][1000 genomes]
rs2860252	0.92[EUR][1000 genomes]
rs2860498	0.92[EUR][1000 genomes]
rs2860508	0.92[EUR][1000 genomes]
rs2866128	0.92[EUR][1000 genomes]
rs2866129	0.92[EUR][1000 genomes]
rs2960562	0.92[EUR][1000 genomes]
rs3017315	0.95[EUR][1000 genomes]
rs3017316	0.92[EUR][1000 genomes]
rs3017569	0.92[EUR][1000 genomes]
rs3017572	0.95[EUR][1000 genomes]
rs3017576	0.92[EUR][1000 genomes]
rs35845551	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61058019	0.92[EUR][1000 genomes]
rs7103802	0.92[EUR][1000 genomes]
rs71484422	0.95[EUR][1000 genomes]
rs71484424	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71484425	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs746885	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs948843	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56971200-56978000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:56973400-56978000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr11:56973600-56978000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:56973600-56978000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:56973600-56980200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:56973800-56978000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:56973800-56978000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:56973800-56978200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:56974000-56978000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:56974000-56978200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:56974000-56980400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:56974000-56981000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:56974200-56978200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:56974400-56978000	Weak transcription	Lung	lung
15	chr11:56974800-56978200	Weak transcription	Right Ventricle	heart
16	chr11:56975000-56978200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:56975200-56978400	Weak transcription	Left Ventricle	heart
18	chr11:56975200-56981000	Weak transcription	Right Atrium	heart
19	chr11:56975600-56978200	Weak transcription	Adipose Nuclei	Adipose
20	chr11:56977000-56983000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:56977400-56978200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr11:56977400-56981200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:56977400-56981200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:56977600-56978800	Enhancers	Fetal Muscle Leg	muscle
25	chr11:56977600-56978800	Enhancers	Fetal Stomach	stomach
26	chr11:56977600-56979000	Enhancers	Spleen	Spleen
27	chr11:56977600-56979200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr11:56977800-56978400	Weak transcription	Brain Germinal Matrix	brain
29	chr11:56977800-56978600	Enhancers	Placenta	Placenta
30	chr11:56977800-56978800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr11:56977800-56979200	Enhancers	Fetal Lung	lung

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