Variant report

Variant	rs1941055
Chromosome Location	chr11:56921505-56921506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1124846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs12787728	1.00[CEU][hapmap]
rs12788466	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs12808495	0.95[EUR][1000 genomes]
rs17145552	0.95[EUR][1000 genomes]
rs17145556	0.95[EUR][1000 genomes]
rs17151664	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17151671	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs17651297	0.84[EUR][1000 genomes]
rs1939488	1.00[CEU][hapmap]
rs1941034	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941037	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941054	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941056	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943477	0.90[EUR][1000 genomes]
rs1943478	0.90[EUR][1000 genomes]
rs1943485	0.95[EUR][1000 genomes]
rs1943488	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs2077188	0.95[EUR][1000 genomes]
rs2156457	0.87[EUR][1000 genomes]
rs2156458	0.87[EUR][1000 genomes]
rs2156460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs2212608	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860252	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860498	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860508	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866128	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866129	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960562	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017315	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017316	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017569	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017572	0.95[EUR][1000 genomes]
rs3017576	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs34960942	0.90[EUR][1000 genomes]
rs35845551	0.84[EUR][1000 genomes]
rs61058019	0.97[EUR][1000 genomes]
rs6591419	1.00[CEU][hapmap]
rs7103802	0.97[EUR][1000 genomes]
rs71484422	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484424	0.95[EUR][1000 genomes]
rs71484425	0.95[EUR][1000 genomes]
rs746885	0.82[EUR][1000 genomes]
rs948843	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56916400-56923000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:56917600-56922800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:56918200-56923000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:56918400-56922400	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:56918600-56922600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:56918600-56922800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:56918600-56922800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:56919200-56922800	Weak transcription	K562	blood
9	chr11:56919600-56922800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:56919600-56923400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:56920000-56922600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:56920400-56923200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:56921000-56921800	Weak transcription	Placenta	Placenta

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