Variant report

Variant	rs71484424
Chromosome Location	chr11:56954118-56954119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:56945716..56947687-chr11:56952025..56954655,2	K562	blood:
2	chr11:56952647..56955298-chr11:56956349..56958322,2	K562	blood:
3	chr11:56949100..56951767-chr11:56952168..56954744,3	MCF-7	breast:
4	chr11:56946187..56949626-chr11:56951175..56954538,4	K562	blood:

Variant related genes	Relation type
ENSG00000183908	Chromatin interaction

Extended variants
information (count: 165 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:163)

rs_ID	r²[population]
rs11228869	1.00[AFR][1000 genomes]
rs1124846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417284	1.00[AFR][1000 genomes]
rs12417291	1.00[AFR][1000 genomes]
rs12417609	1.00[AFR][1000 genomes]
rs12417875	1.00[AFR][1000 genomes]
rs12418588	1.00[AFR][1000 genomes]
rs12419014	1.00[AFR][1000 genomes]
rs12419826	1.00[AFR][1000 genomes]
rs12420248	1.00[AFR][1000 genomes]
rs12420271	1.00[AFR][1000 genomes]
rs12420925	1.00[AFR][1000 genomes]
rs12576471	1.00[AFR][1000 genomes]
rs12576855	1.00[AFR][1000 genomes]
rs12785770	1.00[AFR][1000 genomes]
rs12786396	1.00[AFR][1000 genomes]
rs12787770	1.00[AFR][1000 genomes]
rs12788046	1.00[AFR][1000 genomes]
rs12788466	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12789248	1.00[AFR][1000 genomes]
rs12789789	1.00[AFR][1000 genomes]
rs12790623	1.00[AFR][1000 genomes]
rs12792413	1.00[AFR][1000 genomes]
rs12792425	1.00[AFR][1000 genomes]
rs12794899	1.00[AFR][1000 genomes]
rs12797343	1.00[AFR][1000 genomes]
rs12798121	1.00[AFR][1000 genomes]
rs12799582	1.00[AFR][1000 genomes]
rs12800182	1.00[AFR][1000 genomes]
rs12800196	1.00[AFR][1000 genomes]
rs12800402	1.00[AFR][1000 genomes]
rs12801000	1.00[AFR][1000 genomes]
rs12801065	1.00[AFR][1000 genomes]
rs12801201	1.00[AFR][1000 genomes]
rs12802096	1.00[AFR][1000 genomes]
rs12803405	1.00[AFR][1000 genomes]
rs12804022	1.00[AFR][1000 genomes]
rs12804298	1.00[AFR][1000 genomes]
rs12806656	1.00[AFR][1000 genomes]
rs12806978	1.00[AFR][1000 genomes]
rs12807593	1.00[AFR][1000 genomes]
rs12807925	1.00[AFR][1000 genomes]
rs12808193	1.00[AFR][1000 genomes]
rs12808495	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12808534	1.00[AFR][1000 genomes]
rs12808784	1.00[AFR][1000 genomes]
rs12808788	1.00[AFR][1000 genomes]
rs17145552	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17145556	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17151560	1.00[AFR][1000 genomes]
rs17151564	1.00[AFR][1000 genomes]
rs17151596	1.00[AFR][1000 genomes]
rs17151610	1.00[AFR][1000 genomes]
rs17151664	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs17151671	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17151703	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151841	1.00[AFR][1000 genomes]
rs17564188	1.00[AFR][1000 genomes]
rs17651297	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17651573	1.00[AFR][1000 genomes]
rs1806823	1.00[AFR][1000 genomes]
rs1941034	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1941037	0.97[EUR][1000 genomes]
rs1941054	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1941055	0.95[EUR][1000 genomes]
rs1941056	0.95[EUR][1000 genomes]
rs1942608	1.00[AFR][1000 genomes]
rs1942624	1.00[AFR][1000 genomes]
rs1942628	1.00[AFR][1000 genomes]
rs1943477	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943478	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943488	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077188	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2156457	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2156458	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2156460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2212608	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2860252	0.97[EUR][1000 genomes]
rs2860498	0.97[EUR][1000 genomes]
rs2860508	0.97[EUR][1000 genomes]
rs2866128	0.97[EUR][1000 genomes]
rs2866129	0.97[EUR][1000 genomes]
rs2960562	0.97[EUR][1000 genomes]
rs3017315	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3017316	0.97[EUR][1000 genomes]
rs3017569	0.97[EUR][1000 genomes]
rs3017572	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017576	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34014874	1.00[AFR][1000 genomes]
rs34052386	1.00[AFR][1000 genomes]
rs34069781	1.00[AFR][1000 genomes]
rs34076116	1.00[AFR][1000 genomes]
rs34177110	1.00[AFR][1000 genomes]
rs34458685	1.00[AFR][1000 genomes]
rs34498883	1.00[AFR][1000 genomes]
rs34505638	1.00[AFR][1000 genomes]
rs34544917	1.00[AFR][1000 genomes]
rs34572680	1.00[AFR][1000 genomes]
rs34704777	1.00[AFR][1000 genomes]
rs34742309	1.00[AFR][1000 genomes]
rs34754262	1.00[AFR][1000 genomes]
rs34761603	1.00[AFR][1000 genomes]
rs34769912	1.00[AFR][1000 genomes]
rs34786579	1.00[AFR][1000 genomes]
rs34850337	1.00[AFR][1000 genomes]
rs34905018	1.00[AFR][1000 genomes]
rs34960942	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34985061	1.00[AFR][1000 genomes]
rs35272228	1.00[AFR][1000 genomes]
rs35284031	1.00[AFR][1000 genomes]
rs35366909	1.00[AFR][1000 genomes]
rs35388927	1.00[AFR][1000 genomes]
rs35536636	1.00[AFR][1000 genomes]
rs35566323	1.00[AFR][1000 genomes]
rs35707583	1.00[AFR][1000 genomes]
rs35721601	1.00[AFR][1000 genomes]
rs35775860	1.00[AFR][1000 genomes]
rs35818468	1.00[AFR][1000 genomes]
rs35823562	1.00[AFR][1000 genomes]
rs35845551	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35943801	1.00[AFR][1000 genomes]
rs35950335	1.00[AFR][1000 genomes]
rs35980006	1.00[AFR][1000 genomes]
rs35991636	1.00[AFR][1000 genomes]
rs36090449	1.00[AFR][1000 genomes]
rs36114037	1.00[AFR][1000 genomes]
rs55998005	1.00[AFR][1000 genomes]
rs61058019	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103223	1.00[AFR][1000 genomes]
rs7103802	0.97[EUR][1000 genomes]
rs7117064	1.00[AFR][1000 genomes]
rs7117618	1.00[AFR][1000 genomes]
rs71460546	1.00[AFR][1000 genomes]
rs71482297	1.00[AFR][1000 genomes]
rs71482299	1.00[AFR][1000 genomes]
rs71484411	1.00[AFR][1000 genomes]
rs71484414	1.00[AFR][1000 genomes]
rs71484419	1.00[AFR][1000 genomes]
rs71484422	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71484425	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484428	1.00[AFR][1000 genomes]
rs71484429	1.00[AFR][1000 genomes]
rs71484430	1.00[AFR][1000 genomes]
rs71484431	1.00[AFR][1000 genomes]
rs71484432	1.00[AFR][1000 genomes]
rs71484433	1.00[AFR][1000 genomes]
rs71484434	1.00[AFR][1000 genomes]
rs71484435	1.00[AFR][1000 genomes]
rs71484436	1.00[AFR][1000 genomes]
rs71484437	1.00[AFR][1000 genomes]
rs71484441	1.00[AFR][1000 genomes]
rs71484444	1.00[AFR][1000 genomes]
rs71484445	1.00[AFR][1000 genomes]
rs71484446	1.00[AFR][1000 genomes]
rs717117	1.00[AFR][1000 genomes]
rs744262	1.00[AFR][1000 genomes]
rs746885	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7479689	1.00[AFR][1000 genomes]
rs7947850	1.00[AFR][1000 genomes]
rs948722	1.00[AFR][1000 genomes]
rs948723	1.00[AFR][1000 genomes]
rs948843	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56948200-56959200	Weak transcription	Gastric	stomach
2	chr11:56948400-56959400	Weak transcription	Right Atrium	heart
3	chr11:56948600-56955400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:56948800-56954800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:56949200-56955000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:56949400-56962600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:56950200-56955200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:56950200-56960400	Weak transcription	Right Ventricle	heart
9	chr11:56950200-56969800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:56951600-56954800	Weak transcription	Fetal Stomach	stomach
11	chr11:56952000-56954800	Weak transcription	Spleen	Spleen
12	chr11:56952600-56967000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:56953000-56958400	Strong transcription	Brain Germinal Matrix	brain
14	chr11:56953200-56958400	Weak transcription	Fetal Brain Male	brain
15	chr11:56953800-56954200	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:56954000-56954200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
17	chr11:56954000-56954200	Enhancers	Lung	lung
18	chr11:56954000-56957800	Strong transcription	Fetal Brain Female	brain

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