Variant report

Variant	rs12807925
Chromosome Location	chr11:56838414-56838415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs11228869	1.00[AFR][1000 genomes]
rs1124846	1.00[AFR][1000 genomes]
rs12417284	1.00[AFR][1000 genomes]
rs12417291	1.00[AFR][1000 genomes]
rs12417609	1.00[AFR][1000 genomes]
rs12417875	1.00[AFR][1000 genomes]
rs12418588	1.00[AFR][1000 genomes]
rs12419014	1.00[AFR][1000 genomes]
rs12419826	1.00[AFR][1000 genomes]
rs12420248	1.00[AFR][1000 genomes]
rs12420271	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12420925	1.00[AFR][1000 genomes]
rs12576471	1.00[AFR][1000 genomes]
rs12576855	1.00[AFR][1000 genomes]
rs12785770	1.00[AFR][1000 genomes]
rs12787770	1.00[AFR][1000 genomes]
rs12789248	1.00[AFR][1000 genomes]
rs12789789	1.00[AFR][1000 genomes]
rs12790623	1.00[AFR][1000 genomes]
rs12792413	1.00[AFR][1000 genomes]
rs12792425	1.00[AFR][1000 genomes]
rs12794899	1.00[AFR][1000 genomes]
rs12797343	1.00[AFR][1000 genomes]
rs12800196	1.00[AFR][1000 genomes]
rs12800402	1.00[AFR][1000 genomes]
rs12801065	1.00[AFR][1000 genomes]
rs12801201	1.00[AFR][1000 genomes]
rs12803405	1.00[AFR][1000 genomes]
rs12804298	1.00[AFR][1000 genomes]
rs12808495	1.00[AFR][1000 genomes]
rs12808534	1.00[AFR][1000 genomes]
rs17145552	1.00[AFR][1000 genomes]
rs17145556	1.00[AFR][1000 genomes]
rs17151560	1.00[AFR][1000 genomes]
rs17151564	1.00[AFR][1000 genomes]
rs17151596	1.00[AFR][1000 genomes]
rs17151610	1.00[AFR][1000 genomes]
rs17151664	1.00[AFR][1000 genomes]
rs17151671	1.00[AFR][1000 genomes]
rs17564188	1.00[AFR][1000 genomes]
rs17651297	1.00[AFR][1000 genomes]
rs17651573	1.00[AFR][1000 genomes]
rs1806823	1.00[AFR][1000 genomes]
rs1941034	1.00[AFR][1000 genomes]
rs1941054	1.00[AFR][1000 genomes]
rs1942608	1.00[AFR][1000 genomes]
rs1942624	1.00[AFR][1000 genomes]
rs1942628	1.00[AFR][1000 genomes]
rs1943485	1.00[AFR][1000 genomes]
rs2077188	1.00[AFR][1000 genomes]
rs2156457	1.00[AFR][1000 genomes]
rs2156458	1.00[AFR][1000 genomes]
rs2156460	1.00[AFR][1000 genomes]
rs2212608	1.00[AFR][1000 genomes]
rs34052386	1.00[AFR][1000 genomes]
rs34458685	1.00[AFR][1000 genomes]
rs34544917	1.00[AFR][1000 genomes]
rs34704777	1.00[AFR][1000 genomes]
rs34742309	1.00[AFR][1000 genomes]
rs34769912	1.00[AFR][1000 genomes]
rs34786579	1.00[AFR][1000 genomes]
rs34941097	0.83[EUR][1000 genomes]
rs34985061	1.00[AFR][1000 genomes]
rs35536636	1.00[AFR][1000 genomes]
rs35775860	1.00[AFR][1000 genomes]
rs35823562	1.00[AFR][1000 genomes]
rs35845551	1.00[AFR][1000 genomes]
rs36114037	1.00[AFR][1000 genomes]
rs55998005	1.00[AFR][1000 genomes]
rs7103223	1.00[AFR][1000 genomes]
rs7117064	1.00[AFR][1000 genomes]
rs7117618	1.00[AFR][1000 genomes]
rs71460546	1.00[AFR][1000 genomes]
rs71482297	1.00[AFR][1000 genomes]
rs71482299	1.00[AFR][1000 genomes]
rs71484411	1.00[AFR][1000 genomes]
rs71484414	1.00[AFR][1000 genomes]
rs71484419	1.00[AFR][1000 genomes]
rs71484422	1.00[AFR][1000 genomes]
rs71484424	1.00[AFR][1000 genomes]
rs71484425	1.00[AFR][1000 genomes]
rs71484428	1.00[AFR][1000 genomes]
rs71484429	1.00[AFR][1000 genomes]
rs71484430	1.00[AFR][1000 genomes]
rs71484431	1.00[AFR][1000 genomes]
rs71484432	1.00[AFR][1000 genomes]
rs717117	1.00[AFR][1000 genomes]
rs744262	1.00[AFR][1000 genomes]
rs746885	1.00[AFR][1000 genomes]
rs7479689	1.00[AFR][1000 genomes]
rs7947850	1.00[AFR][1000 genomes]
rs948722	1.00[AFR][1000 genomes]
rs948723	1.00[AFR][1000 genomes]
rs948843	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56837600-56841200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:56837800-56839400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:56838000-56839400	Weak transcription	HMEC	breast
4	chr11:56838200-56839800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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