Variant report

Variant	rs34941097
Chromosome Location	chr11:56720087-56720088
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12420177	1.00[AFR][1000 genomes]
rs12420271	0.88[EUR][1000 genomes]
rs12575372	1.00[AFR][1000 genomes]
rs12788136	1.00[AFR][1000 genomes]
rs12794495	1.00[AFR][1000 genomes]
rs12798610	1.00[AFR][1000 genomes]
rs12799815	1.00[AFR][1000 genomes]
rs12800063	1.00[AFR][1000 genomes]
rs12807925	0.83[EUR][1000 genomes]
rs17560574	1.00[AFR][1000 genomes]
rs17640714	1.00[AFR][1000 genomes]
rs35614891	1.00[AFR][1000 genomes]
rs7128426	1.00[AFR][1000 genomes]
rs71495231	1.00[AFR][1000 genomes]
rs7926761	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045889	chr11:56624365-56737435	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56719800-56720200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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