Variant report

Variant	rs12420271
Chromosome Location	chr11:56764852-56764853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11228869	1.00[AFR][1000 genomes]
rs1124846	1.00[AFR][1000 genomes]
rs12417284	1.00[AFR][1000 genomes]
rs12417291	1.00[AFR][1000 genomes]
rs12417609	1.00[AFR][1000 genomes]
rs12417875	1.00[AFR][1000 genomes]
rs12418588	1.00[AFR][1000 genomes]
rs12419014	1.00[AFR][1000 genomes]
rs12419826	1.00[AFR][1000 genomes]
rs12420248	1.00[AFR][1000 genomes]
rs12420925	1.00[AFR][1000 genomes]
rs12576855	1.00[AFR][1000 genomes]
rs12787770	1.00[AFR][1000 genomes]
rs12789248	1.00[AFR][1000 genomes]
rs12790623	1.00[AFR][1000 genomes]
rs12792413	1.00[AFR][1000 genomes]
rs12792425	1.00[AFR][1000 genomes]
rs12794899	1.00[AFR][1000 genomes]
rs12797343	1.00[AFR][1000 genomes]
rs12800402	1.00[AFR][1000 genomes]
rs12801065	1.00[AFR][1000 genomes]
rs12801201	1.00[AFR][1000 genomes]
rs12804298	1.00[AFR][1000 genomes]
rs12807925	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12808495	1.00[AFR][1000 genomes]
rs12808534	1.00[AFR][1000 genomes]
rs17151560	1.00[AFR][1000 genomes]
rs17151564	1.00[AFR][1000 genomes]
rs17151596	1.00[AFR][1000 genomes]
rs17151610	1.00[AFR][1000 genomes]
rs17151664	1.00[AFR][1000 genomes]
rs17151671	1.00[AFR][1000 genomes]
rs17564188	1.00[AFR][1000 genomes]
rs1806823	1.00[AFR][1000 genomes]
rs1941034	1.00[AFR][1000 genomes]
rs1941054	1.00[AFR][1000 genomes]
rs1942608	1.00[AFR][1000 genomes]
rs1942624	1.00[AFR][1000 genomes]
rs1942628	1.00[AFR][1000 genomes]
rs1943651	1.00[AFR][1000 genomes]
rs2077188	1.00[AFR][1000 genomes]
rs2156460	1.00[AFR][1000 genomes]
rs2212608	1.00[AFR][1000 genomes]
rs34052386	1.00[AFR][1000 genomes]
rs34786579	1.00[AFR][1000 genomes]
rs34941097	0.88[EUR][1000 genomes]
rs34985061	1.00[AFR][1000 genomes]
rs35775860	1.00[AFR][1000 genomes]
rs35823562	1.00[AFR][1000 genomes]
rs36114037	1.00[AFR][1000 genomes]
rs55998005	1.00[AFR][1000 genomes]
rs7103223	1.00[AFR][1000 genomes]
rs7117064	1.00[AFR][1000 genomes]
rs7117618	1.00[AFR][1000 genomes]
rs71460546	1.00[AFR][1000 genomes]
rs71482297	1.00[AFR][1000 genomes]
rs71482299	1.00[AFR][1000 genomes]
rs71484411	1.00[AFR][1000 genomes]
rs71484414	1.00[AFR][1000 genomes]
rs71484419	1.00[AFR][1000 genomes]
rs71484422	1.00[AFR][1000 genomes]
rs71484424	1.00[AFR][1000 genomes]
rs717117	1.00[AFR][1000 genomes]
rs744262	1.00[AFR][1000 genomes]
rs7479689	1.00[AFR][1000 genomes]
rs7947850	1.00[AFR][1000 genomes]
rs948722	1.00[AFR][1000 genomes]
rs948723	1.00[AFR][1000 genomes]
rs948843	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv3418631	chr11:56756505-56785670	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3361446	chr11:56756549-56775770	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56763000-56768800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:56763600-56768400	Weak transcription	Spleen	Spleen

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