Variant report

Variant	rs12797343
Chromosome Location	chr11:56840256-56840257
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 206 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:204)

rs_ID	r²[population]
rs10501360	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228827	1.00[ASN][1000 genomes]
rs11228869	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228894	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1124846	1.00[AFR][1000 genomes]
rs12271904	1.00[ASN][1000 genomes]
rs12278474	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293063	1.00[ASN][1000 genomes]
rs12417284	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417291	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417609	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12417875	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12418588	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419014	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419097	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419826	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12420177	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420248	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420271	1.00[AFR][1000 genomes]
rs12420411	1.00[ASN][1000 genomes]
rs12420673	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420832	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420925	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421627	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421707	1.00[CHB][hapmap]
rs12421860	1.00[ASN][1000 genomes]
rs12422121	1.00[ASN][1000 genomes]
rs12574210	0.92[EUR][1000 genomes]
rs12575183	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575372	1.00[ASN][1000 genomes]
rs12575387	1.00[ASN][1000 genomes]
rs12575912	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576168	1.00[ASN][1000 genomes]
rs12576184	1.00[ASN][1000 genomes]
rs12576471	1.00[AFR][1000 genomes]
rs12576591	1.00[ASN][1000 genomes]
rs12576855	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12577285	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785758	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785770	1.00[AFR][1000 genomes]
rs12786654	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12787770	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788136	1.00[ASN][1000 genomes]
rs12789248	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12789789	1.00[AFR][1000 genomes]
rs12790228	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790623	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12791149	0.92[EUR][1000 genomes]
rs12791343	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12791691	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12792413	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12792425	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793368	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794495	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794899	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12795509	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797771	1.00[ASN][1000 genomes]
rs12798610	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12799815	1.00[ASN][1000 genomes]
rs12800063	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800196	1.00[AFR][1000 genomes]
rs12800319	1.00[ASN][1000 genomes]
rs12800402	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12801065	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12801201	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12801391	1.00[ASN][1000 genomes]
rs12801800	0.89[EUR][1000 genomes]
rs12803027	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803405	1.00[AFR][1000 genomes]
rs12803779	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12804100	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12804298	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806510	1.00[ASN][1000 genomes]
rs12806959	1.00[ASN][1000 genomes]
rs12807925	1.00[AFR][1000 genomes]
rs12808034	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808495	1.00[AFR][1000 genomes]
rs12808534	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808890	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1631138	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17145552	1.00[AFR][1000 genomes]
rs17145556	1.00[AFR][1000 genomes]
rs17151364	1.00[ASN][1000 genomes]
rs17151369	1.00[ASN][1000 genomes]
rs17151375	1.00[ASN][1000 genomes]
rs17151560	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151564	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151571	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151596	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17151610	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17151619	1.00[ASN][1000 genomes]
rs17151664	1.00[AFR][1000 genomes]
rs17151671	1.00[AFR][1000 genomes]
rs17560574	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17564188	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17651297	1.00[AFR][1000 genomes]
rs17651573	1.00[AFR][1000 genomes]
rs1792479	1.00[ASN][1000 genomes]
rs1792523	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1792524	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1792525	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1792526	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1792527	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793425	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793429	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793430	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793436	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793441	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793445	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793459	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1806823	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1938754	1.00[ASN][1000 genomes]
rs1941034	1.00[AFR][1000 genomes]
rs1941050	1.00[ASN][1000 genomes]
rs1941054	1.00[AFR][1000 genomes]
rs1942607	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942608	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942609	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942622	0.92[EUR][1000 genomes]
rs1942624	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942628	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943485	1.00[AFR][1000 genomes]
rs1945575	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1985204	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008410	1.00[ASN][1000 genomes]
rs2077188	1.00[AFR][1000 genomes]
rs2156457	1.00[AFR][1000 genomes]
rs2156458	1.00[AFR][1000 genomes]
rs2156460	1.00[AFR][1000 genomes]
rs2212608	1.00[AFR][1000 genomes]
rs2957177	1.00[ASN][1000 genomes]
rs2957181	0.92[EUR][1000 genomes]
rs3017563	1.00[ASN][1000 genomes]
rs34052386	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34175469	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34356177	1.00[ASN][1000 genomes]
rs34371962	1.00[ASN][1000 genomes]
rs34458685	1.00[AFR][1000 genomes]
rs34463358	1.00[ASN][1000 genomes]
rs34544917	1.00[AFR][1000 genomes]
rs34704777	1.00[AFR][1000 genomes]
rs34742309	1.00[AFR][1000 genomes]
rs34769912	1.00[AFR][1000 genomes]
rs34786579	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34985061	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs35131429	1.00[ASN][1000 genomes]
rs35358246	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35536636	1.00[AFR][1000 genomes]
rs35614891	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35621347	1.00[ASN][1000 genomes]
rs35775860	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35812761	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35823562	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35845551	1.00[AFR][1000 genomes]
rs35894545	1.00[ASN][1000 genomes]
rs35948979	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36092341	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36114037	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4480561	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4550240	0.92[EUR][1000 genomes]
rs4576837	1.00[ASN][1000 genomes]
rs4628689	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4633488	0.83[EUR][1000 genomes]
rs55817650	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55998005	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56008041	1.00[ASN][1000 genomes]
rs7102425	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103223	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113214	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117064	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117618	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128426	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130659	1.00[ASN][1000 genomes]
rs71460546	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71482293	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71482297	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71482299	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484408	1.00[ASN][1000 genomes]
rs71484409	1.00[ASN][1000 genomes]
rs71484410	1.00[ASN][1000 genomes]
rs71484411	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484414	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs71484415	0.92[EUR][1000 genomes]
rs71484416	0.92[EUR][1000 genomes]
rs71484419	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs71484422	1.00[AFR][1000 genomes]
rs71484424	1.00[AFR][1000 genomes]
rs71484425	1.00[AFR][1000 genomes]
rs71484428	1.00[AFR][1000 genomes]
rs71484429	1.00[AFR][1000 genomes]
rs71484430	1.00[AFR][1000 genomes]
rs71484431	1.00[AFR][1000 genomes]
rs71484432	1.00[AFR][1000 genomes]
rs71495236	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs717117	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs730206	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744262	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746885	1.00[AFR][1000 genomes]
rs7479689	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926761	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947850	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs948722	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs948723	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs948843	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56837600-56841200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:56839000-56841000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:56839200-56841200	Enhancers	Hela-S3	cervix
4	chr11:56839200-56841200	Enhancers	NH-A	brain
5	chr11:56839200-56841200	Enhancers	NHEK	skin
6	chr11:56839400-56841000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:56839400-56841000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:56839400-56841000	Enhancers	HUVEC	blood vessel
9	chr11:56839400-56841000	Enhancers	Osteobl	bone
10	chr11:56839400-56841200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:56839400-56841200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:56839400-56841200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:56839400-56841400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:56839400-56841400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:56839400-56841400	Enhancers	HMEC	breast
16	chr11:56839400-56841400	Enhancers	HSMM	muscle
17	chr11:56839400-56841400	Enhancers	NHLF	lung
18	chr11:56839400-56841600	Enhancers	HSMMtube	muscle
19	chr11:56839800-56840400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:56840000-56841200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr11:56840000-56841600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:56840200-56840400	Enhancers	A549	lung
23	chr11:56840200-56841400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:56840200-56841400	Enhancers	NHDF-Ad	bronchial
25	chr11:56840200-56851600	Weak transcription	Spleen	Spleen

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