Variant report

Variant	rs12422121
Chromosome Location	chr11:56867076-56867077
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 151 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:148)

rs_ID	r²[population]
rs10501360	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228869	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228894	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278474	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293063	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417284	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417291	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418588	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419014	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419097	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419826	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420177	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420248	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420445	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs12420673	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420832	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420925	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421627	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421707	1.00[CHB][hapmap]
rs12421860	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575183	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575372	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575387	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575912	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576168	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576184	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576591	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577285	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577345	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12785758	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12786177	0.95[EUR][1000 genomes]
rs12786654	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12787770	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788823	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12789248	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790228	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790623	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12791343	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12791691	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12792425	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793368	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794495	1.00[ASN][1000 genomes]
rs12794899	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12795509	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797343	1.00[ASN][1000 genomes]
rs12797771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12798610	1.00[ASN][1000 genomes]
rs12800063	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800319	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12801065	0.93[EUR][1000 genomes]
rs12801201	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803027	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803779	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12804100	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12804298	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806510	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806959	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808034	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808534	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808890	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1631138	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151364	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151369	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151375	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151560	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151564	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151571	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151623	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1792479	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1792523	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1792524	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1792525	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1792526	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1792527	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793423	1.00[CEU][hapmap]
rs1793425	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793429	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793430	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793436	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793441	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793445	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793459	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941050	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942607	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942608	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942609	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942616	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1942624	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942628	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945575	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1985204	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008410	1.00[ASN][1000 genomes]
rs2957177	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017562	0.97[EUR][1000 genomes]
rs3017563	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34052386	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34175469	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34356177	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34371962	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34463358	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34786579	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35131429	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35358246	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35614891	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35621347	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35775860	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35812761	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35823562	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35948979	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36092341	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36114037	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4412767	0.83[EUR][1000 genomes]
rs4480561	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4576837	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4628689	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4633488	0.93[EUR][1000 genomes]
rs55817650	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55998005	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56008041	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102425	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103223	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113214	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117064	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117618	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128426	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130724	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap]
rs71460546	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71482293	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71482297	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71482299	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484408	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484409	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484411	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71495236	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs730206	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744262	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7479689	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926761	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947850	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs948722	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs948723	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56866200-56867200	Weak transcription	Lung	lung
2	chr11:56866200-56868200	Weak transcription	Fetal Lung	lung
3	chr11:56866200-56871800	Weak transcription	Right Atrium	heart
4	chr11:56866400-56869400	Weak transcription	Fetal Stomach	stomach
5	chr11:56867000-56868600	Enhancers	Ovary	ovary

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