Variant report

Variant	rs1943488
Chromosome Location	chr11:56957738-56957739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:56952647..56955298-chr11:56956349..56958322,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-P2RX3-4	chr11:56956461-56959187	NONHSAT021403

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1124846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12787728	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs12788466	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12798121	1.00[MEX][hapmap]
rs12800182	1.00[MEX][hapmap]
rs12808495	0.97[EUR][1000 genomes]
rs17145552	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17145556	0.97[EUR][1000 genomes]
rs17151664	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[EUR][1000 genomes]
rs17151671	0.95[EUR][1000 genomes]
rs17151703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151841	1.00[MEX][hapmap]
rs17651297	0.87[EUR][1000 genomes]
rs1939488	1.00[CEU][hapmap]
rs1941034	0.97[EUR][1000 genomes]
rs1941037	1.00[EUR][1000 genomes]
rs1941054	0.95[EUR][1000 genomes]
rs1941055	0.97[EUR][1000 genomes]
rs1941056	0.97[EUR][1000 genomes]
rs1943477	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943478	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943485	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077188	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2156457	0.89[EUR][1000 genomes]
rs2156458	0.89[EUR][1000 genomes]
rs2156460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2212608	0.95[EUR][1000 genomes]
rs2860252	1.00[EUR][1000 genomes]
rs2860498	1.00[EUR][1000 genomes]
rs2860508	1.00[EUR][1000 genomes]
rs2866128	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2866129	1.00[EUR][1000 genomes]
rs2960562	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3017315	0.97[EUR][1000 genomes]
rs3017316	1.00[EUR][1000 genomes]
rs3017569	1.00[EUR][1000 genomes]
rs3017572	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017576	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34960942	0.92[EUR][1000 genomes]
rs35284031	1.00[MEX][hapmap]
rs35845551	0.87[EUR][1000 genomes]
rs56410703	0.81[AFR][1000 genomes]
rs56801214	0.80[AFR][1000 genomes]
rs58869267	0.81[AFR][1000 genomes]
rs60196378	0.91[AFR][1000 genomes]
rs61058019	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591419	1.00[CEU][hapmap]
rs7103802	1.00[EUR][1000 genomes]
rs71484422	0.97[EUR][1000 genomes]
rs71484424	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484425	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73468666	0.84[AFR][1000 genomes]
rs73468671	0.85[AFR][1000 genomes]
rs73468672	0.85[AFR][1000 genomes]
rs746885	0.84[EUR][1000 genomes]
rs948843	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56948200-56959200	Weak transcription	Gastric	stomach
2	chr11:56948400-56959400	Weak transcription	Right Atrium	heart
3	chr11:56949400-56962600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:56950200-56960400	Weak transcription	Right Ventricle	heart
5	chr11:56950200-56969800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:56952600-56967000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:56953000-56958400	Strong transcription	Brain Germinal Matrix	brain
8	chr11:56953200-56958400	Weak transcription	Fetal Brain Male	brain
9	chr11:56954000-56957800	Strong transcription	Fetal Brain Female	brain
10	chr11:56954400-56958400	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:56955000-56959400	Weak transcription	Lung	lung
12	chr11:56955200-56958600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:56955200-56959200	Weak transcription	Fetal Stomach	stomach
14	chr11:56955800-56962600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:56956000-56958400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:56956000-56958600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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