Variant report

Variant	rs73468672
Chromosome Location	chr11:56974160-56974161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1943488	0.85[AFR][1000 genomes]
rs56043520	1.00[EUR][1000 genomes]
rs56291203	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56332254	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56410703	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56801214	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56808298	1.00[EUR][1000 genomes]
rs56825823	1.00[EUR][1000 genomes]
rs57230372	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57437126	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57500725	1.00[EUR][1000 genomes]
rs57570811	1.00[EUR][1000 genomes]
rs58810319	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58869267	0.96[AFR][1000 genomes]
rs59231801	1.00[EUR][1000 genomes]
rs59267531	1.00[EUR][1000 genomes]
rs60196378	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60651361	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61427216	1.00[EUR][1000 genomes]
rs675913	1.00[EUR][1000 genomes]
rs7103566	1.00[EUR][1000 genomes]
rs7124204	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7125852	1.00[EUR][1000 genomes]
rs73468618	1.00[EUR][1000 genomes]
rs73468621	1.00[EUR][1000 genomes]
rs73468629	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468634	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468648	1.00[EUR][1000 genomes]
rs73468666	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468675	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468679	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468680	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73470503	1.00[EUR][1000 genomes]
rs73470550	1.00[EUR][1000 genomes]
rs7946444	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56968200-56974400	Enhancers	Fetal Muscle Trunk	muscle
2	chr11:56968200-56975200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
3	chr11:56971200-56978000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:56971600-56974800	Weak transcription	Right Atrium	heart
5	chr11:56971600-56974800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:56972600-56974200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:56972800-56974200	Weak transcription	Spleen	Spleen
8	chr11:56973000-56974400	Weak transcription	Left Ventricle	heart
9	chr11:56973000-56977800	Weak transcription	Fetal Lung	lung
10	chr11:56973400-56977000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:56973400-56978000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:56973600-56974400	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:56973600-56977600	Weak transcription	Fetal Stomach	stomach
14	chr11:56973600-56978000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:56973600-56978000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:56973600-56980200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:56973800-56974200	Bivalent Enhancer	Placenta	Placenta
18	chr11:56973800-56974400	Enhancers	Lung	lung
19	chr11:56973800-56974800	Enhancers	Right Ventricle	heart
20	chr11:56973800-56978000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:56973800-56978000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:56973800-56978200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr11:56974000-56974400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr11:56974000-56978000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:56974000-56978200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr11:56974000-56980400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:56974000-56981000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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