Variant report

Variant	rs57500725
Chromosome Location	chr11:56949125-56949126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:56948698-56949703	K562	blood:	n/a	n/a
2	CTBP2	chr11:56947016-56949186	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
LRRC55	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs56043520	1.00[EUR][1000 genomes]
rs56291203	1.00[EUR][1000 genomes]
rs56332254	1.00[EUR][1000 genomes]
rs56410703	1.00[EUR][1000 genomes]
rs56808298	1.00[EUR][1000 genomes]
rs56825823	1.00[EUR][1000 genomes]
rs57437126	1.00[EUR][1000 genomes]
rs57570811	1.00[EUR][1000 genomes]
rs58810319	1.00[EUR][1000 genomes]
rs59231801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59267531	1.00[EUR][1000 genomes]
rs60196378	1.00[EUR][1000 genomes]
rs60651361	1.00[EUR][1000 genomes]
rs61427216	1.00[EUR][1000 genomes]
rs675913	1.00[EUR][1000 genomes]
rs7103566	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7124204	1.00[EUR][1000 genomes]
rs7125852	1.00[EUR][1000 genomes]
rs73468618	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468621	1.00[EUR][1000 genomes]
rs73468629	1.00[EUR][1000 genomes]
rs73468634	1.00[EUR][1000 genomes]
rs73468648	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468666	1.00[EUR][1000 genomes]
rs73468671	1.00[EUR][1000 genomes]
rs73468672	1.00[EUR][1000 genomes]
rs73468675	1.00[EUR][1000 genomes]
rs73468679	1.00[EUR][1000 genomes]
rs73468680	1.00[EUR][1000 genomes]
rs73470503	1.00[EUR][1000 genomes]
rs73470550	1.00[EUR][1000 genomes]
rs7946444	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56947800-56950200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr11:56947800-56950200	Enhancers	Lung	lung
3	chr11:56947800-56952000	Enhancers	Spleen	Spleen
4	chr11:56948000-56949600	Bivalent Enhancer	Fetal Muscle Leg	muscle
5	chr11:56948000-56950200	Enhancers	Esophagus	oesophagus
6	chr11:56948200-56949600	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
7	chr11:56948200-56959200	Weak transcription	Gastric	stomach
8	chr11:56948400-56949200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:56948400-56949200	Bivalent Enhancer	Brain Hippocampus Middle	brain
10	chr11:56948400-56949600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
11	chr11:56948400-56949600	Enhancers	Brain Anterior Caudate	brain
12	chr11:56948400-56949600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
13	chr11:56948400-56949600	Bivalent Enhancer	Fetal Stomach	stomach
14	chr11:56948400-56950600	Flanking Active TSS	Fetal Brain Female	brain
15	chr11:56948400-56959400	Weak transcription	Right Atrium	heart
16	chr11:56948600-56949200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:56948600-56949200	Bivalent Enhancer	Brain Cingulate Gyrus	brain
18	chr11:56948600-56949400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
19	chr11:56948600-56950200	Flanking Active TSS	Brain Germinal Matrix	brain
20	chr11:56948600-56950200	Enhancers	Left Ventricle	heart
21	chr11:56948600-56955400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:56948800-56949200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
23	chr11:56948800-56949600	Bivalent Enhancer	Adipose Nuclei	Adipose
24	chr11:56948800-56950400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
25	chr11:56948800-56952200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr11:56948800-56953200	Enhancers	Fetal Brain Male	brain
27	chr11:56948800-56954800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:56949000-56949400	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:56949000-56951000	Weak transcription	Stomach Mucosa	stomach

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