Variant report
| Variant | rs675913 |
|---|---|
| Chromosome Location | chr11:56899016-56899017 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:56898304..56899186-chr11:57016267..57017234,5 | MCF-7 | breast: | |
| 2 | chr11:56894422..56896558-chr11:56896581..56899282,3 | K562 | blood: | |
| 3 | chr11:56898268..56899163-chr11:57016603..57017757,8 | K562 | blood: | |
| 4 | chr11:56897171..56899424-chr11:57016274..57018526,19 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs56043520 | 1.00[EUR][1000 genomes] |
| rs56291203 | 1.00[EUR][1000 genomes] |
| rs56332254 | 1.00[EUR][1000 genomes] |
| rs56410703 | 1.00[EUR][1000 genomes] |
| rs56808298 | 1.00[EUR][1000 genomes] |
| rs56825823 | 1.00[EUR][1000 genomes] |
| rs57437126 | 1.00[EUR][1000 genomes] |
| rs57500725 | 1.00[EUR][1000 genomes] |
| rs57570811 | 1.00[EUR][1000 genomes] |
| rs58810319 | 1.00[EUR][1000 genomes] |
| rs59231801 | 1.00[EUR][1000 genomes] |
| rs59267531 | 1.00[EUR][1000 genomes] |
| rs60196378 | 1.00[EUR][1000 genomes] |
| rs60651361 | 1.00[EUR][1000 genomes] |
| rs61427216 | 1.00[EUR][1000 genomes] |
| rs7103566 | 1.00[EUR][1000 genomes] |
| rs7124204 | 1.00[EUR][1000 genomes] |
| rs7125852 | 1.00[EUR][1000 genomes] |
| rs73468618 | 1.00[EUR][1000 genomes] |
| rs73468621 | 1.00[EUR][1000 genomes] |
| rs73468629 | 1.00[EUR][1000 genomes] |
| rs73468634 | 1.00[EUR][1000 genomes] |
| rs73468648 | 1.00[EUR][1000 genomes] |
| rs73468666 | 1.00[EUR][1000 genomes] |
| rs73468671 | 1.00[EUR][1000 genomes] |
| rs73468672 | 1.00[EUR][1000 genomes] |
| rs73468675 | 1.00[EUR][1000 genomes] |
| rs73468679 | 1.00[EUR][1000 genomes] |
| rs73468680 | 1.00[EUR][1000 genomes] |
| rs73470503 | 1.00[EUR][1000 genomes] |
| rs73470550 | 1.00[EUR][1000 genomes] |
| rs7946444 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832162 | chr11:56716658-56901528 | Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv915640 | chr11:56814841-57139786 | Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 3 | nsv482317 | chr11:56857026-57028631 | Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:56899000-56899200 | Flanking Active TSS | Spleen | Spleen |
