Variant report

Variant	rs73468666
Chromosome Location	chr11:56958933-56958934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:56946370..56948285-chr11:56958607..56960284,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-P2RX3-4	chr11:56956461-56959187	NONHSAT021403

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1943488	0.84[AFR][1000 genomes]
rs56043520	1.00[EUR][1000 genomes]
rs56291203	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56332254	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56410703	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56801214	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56808298	1.00[EUR][1000 genomes]
rs56825823	1.00[EUR][1000 genomes]
rs57230372	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57437126	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57500725	1.00[EUR][1000 genomes]
rs57570811	1.00[EUR][1000 genomes]
rs58810319	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58869267	0.97[AFR][1000 genomes]
rs59231801	1.00[EUR][1000 genomes]
rs59267531	1.00[EUR][1000 genomes]
rs60196378	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60651361	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61427216	1.00[EUR][1000 genomes]
rs675913	1.00[EUR][1000 genomes]
rs7103566	1.00[EUR][1000 genomes]
rs7124204	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7125852	1.00[EUR][1000 genomes]
rs73468618	1.00[EUR][1000 genomes]
rs73468621	1.00[EUR][1000 genomes]
rs73468629	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468634	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468648	1.00[EUR][1000 genomes]
rs73468671	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468672	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468675	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468679	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468680	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73470503	1.00[EUR][1000 genomes]
rs73470550	1.00[EUR][1000 genomes]
rs7946444	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56948200-56959200	Weak transcription	Gastric	stomach
2	chr11:56948400-56959400	Weak transcription	Right Atrium	heart
3	chr11:56949400-56962600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:56950200-56960400	Weak transcription	Right Ventricle	heart
5	chr11:56950200-56969800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:56952600-56967000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:56955000-56959400	Weak transcription	Lung	lung
8	chr11:56955200-56959200	Weak transcription	Fetal Stomach	stomach
9	chr11:56955800-56962600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:56958400-56959200	Enhancers	Fetal Muscle Leg	muscle
11	chr11:56958400-56959400	Weak transcription	Brain Germinal Matrix	brain
12	chr11:56958400-56959600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:56958400-56959800	Enhancers	Fetal Brain Male	brain
14	chr11:56958400-56960000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr11:56958400-56960000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr11:56958400-56960400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr11:56958600-56959600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:56958600-56959800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:56958600-56959800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr11:56958600-56960000	Enhancers	Adipose Nuclei	Adipose
21	chr11:56958800-56959800	Enhancers	H1 Cell Line	embryonic stem cell
22	chr11:56958800-56960000	Enhancers	Fetal Brain Female	brain

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