Variant report

Variant	rs73468629
Chromosome Location	chr11:56927678-56927679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs56043520	1.00[EUR][1000 genomes]
rs56291203	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56332254	1.00[EUR][1000 genomes]
rs56410703	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56808298	1.00[EUR][1000 genomes]
rs56825823	1.00[EUR][1000 genomes]
rs57230372	0.85[AMR][1000 genomes]
rs57437126	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57500725	1.00[EUR][1000 genomes]
rs57570811	1.00[EUR][1000 genomes]
rs58810319	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59231801	1.00[EUR][1000 genomes]
rs59267531	1.00[EUR][1000 genomes]
rs60196378	1.00[EUR][1000 genomes]
rs60651361	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61427216	1.00[EUR][1000 genomes]
rs675913	1.00[EUR][1000 genomes]
rs7103566	1.00[EUR][1000 genomes]
rs7124204	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7125852	1.00[EUR][1000 genomes]
rs73468618	1.00[EUR][1000 genomes]
rs73468621	1.00[EUR][1000 genomes]
rs73468634	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468648	1.00[EUR][1000 genomes]
rs73468666	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468671	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468672	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73468675	1.00[EUR][1000 genomes]
rs73468679	1.00[EUR][1000 genomes]
rs73468680	1.00[EUR][1000 genomes]
rs73470503	1.00[EUR][1000 genomes]
rs73470550	1.00[EUR][1000 genomes]
rs7946444	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56923400-56927800	Weak transcription	Adipose Nuclei	Adipose
2	chr11:56924400-56928600	Weak transcription	Stomach Mucosa	stomach
3	chr11:56924400-56931800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:56924600-56929000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:56925400-56931800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:56926000-56928800	Weak transcription	Esophagus	oesophagus
7	chr11:56927600-56929000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:56927600-56929800	Enhancers	Liver	Liver

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