Variant report

Variant	rs59267531
Chromosome Location	chr11:57037206-57037207
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs56043520	1.00[EUR][1000 genomes]
rs56291203	1.00[EUR][1000 genomes]
rs56332254	1.00[EUR][1000 genomes]
rs56410703	1.00[EUR][1000 genomes]
rs56808298	1.00[EUR][1000 genomes]
rs56825823	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57437126	1.00[EUR][1000 genomes]
rs57500725	1.00[EUR][1000 genomes]
rs57570811	1.00[EUR][1000 genomes]
rs57590159	1.00[AFR][1000 genomes]
rs58810319	1.00[EUR][1000 genomes]
rs59182590	0.85[AFR][1000 genomes]
rs59231801	1.00[EUR][1000 genomes]
rs60196378	1.00[EUR][1000 genomes]
rs60361446	0.87[AFR][1000 genomes]
rs60651361	1.00[EUR][1000 genomes]
rs60857883	0.85[AFR][1000 genomes]
rs61427216	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs675913	1.00[EUR][1000 genomes]
rs7103566	1.00[EUR][1000 genomes]
rs7124204	1.00[EUR][1000 genomes]
rs7125852	1.00[EUR][1000 genomes]
rs73468618	1.00[EUR][1000 genomes]
rs73468621	1.00[EUR][1000 genomes]
rs73468629	1.00[EUR][1000 genomes]
rs73468634	1.00[EUR][1000 genomes]
rs73468648	1.00[EUR][1000 genomes]
rs73468666	1.00[EUR][1000 genomes]
rs73468671	1.00[EUR][1000 genomes]
rs73468672	1.00[EUR][1000 genomes]
rs73468675	1.00[EUR][1000 genomes]
rs73468679	1.00[EUR][1000 genomes]
rs73468680	1.00[EUR][1000 genomes]
rs73470503	1.00[EUR][1000 genomes]
rs73470550	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73470586	1.00[AFR][1000 genomes]
rs73470587	0.90[AFR][1000 genomes]
rs73470602	0.87[AFR][1000 genomes]
rs73472529	0.80[AFR][1000 genomes]
rs73472549	0.85[AFR][1000 genomes]
rs7946444	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57036600-57037400	Enhancers	Brain Germinal Matrix	brain
2	chr11:57036600-57037600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:57036600-57037600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:57036600-57037600	Enhancers	Fetal Kidney	kidney
5	chr11:57036600-57037800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr11:57036600-57038000	Enhancers	Duodenum Mucosa	Duodenum
7	chr11:57036600-57038600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr11:57036800-57037400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr11:57036800-57037400	Enhancers	Liver	Liver
10	chr11:57036800-57037400	Enhancers	Fetal Brain Female	brain
11	chr11:57036800-57037400	Enhancers	Left Ventricle	heart
12	chr11:57036800-57037400	Enhancers	Lung	lung
13	chr11:57036800-57037400	Enhancers	Pancreas	Pancrea
14	chr11:57036800-57037400	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr11:57036800-57037600	Enhancers	Fetal Lung	lung
16	chr11:57036800-57037800	Enhancers	Fetal Muscle Leg	muscle
17	chr11:57036800-57038000	Enhancers	Adipose Nuclei	Adipose
18	chr11:57037000-57037400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr11:57037000-57037400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:57037000-57037400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:57037000-57037400	Enhancers	Fetal Intestine Small	intestine
22	chr11:57037000-57037400	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr11:57037000-57037400	Enhancers	Spleen	Spleen
24	chr11:57037000-57037400	Enhancers	NHEK	skin
25	chr11:57037000-57037600	Enhancers	Fetal Stomach	stomach
26	chr11:57037200-57037400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:57037200-57037400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:57037200-57037400	Bivalent Enhancer	HSMMtube	muscle
29	chr11:57037200-57037600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:57037200-57037600	Enhancers	Right Atrium	heart
31	chr11:57037200-57042200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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