Variant report

Variant	rs61427216
Chromosome Location	chr11:57019460-57019461
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57018230..57020024-chr11:57091616..57094566,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149115	Chromatin interaction
ENSG00000254662	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs56043520	1.00[EUR][1000 genomes]
rs56291203	1.00[EUR][1000 genomes]
rs56332254	1.00[EUR][1000 genomes]
rs56410703	1.00[EUR][1000 genomes]
rs56808298	1.00[EUR][1000 genomes]
rs56825823	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57437126	1.00[EUR][1000 genomes]
rs57500725	1.00[EUR][1000 genomes]
rs57570811	1.00[EUR][1000 genomes]
rs57590159	1.00[AFR][1000 genomes]
rs58810319	1.00[EUR][1000 genomes]
rs59182590	0.85[AFR][1000 genomes]
rs59231801	1.00[EUR][1000 genomes]
rs59267531	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60196378	1.00[EUR][1000 genomes]
rs60361446	0.87[AFR][1000 genomes]
rs60651361	1.00[EUR][1000 genomes]
rs60857883	0.85[AFR][1000 genomes]
rs675913	1.00[EUR][1000 genomes]
rs7103566	1.00[EUR][1000 genomes]
rs7124204	1.00[EUR][1000 genomes]
rs7125852	1.00[EUR][1000 genomes]
rs73468618	1.00[EUR][1000 genomes]
rs73468621	1.00[EUR][1000 genomes]
rs73468629	1.00[EUR][1000 genomes]
rs73468634	1.00[EUR][1000 genomes]
rs73468648	1.00[EUR][1000 genomes]
rs73468666	1.00[EUR][1000 genomes]
rs73468671	1.00[EUR][1000 genomes]
rs73468672	1.00[EUR][1000 genomes]
rs73468675	1.00[EUR][1000 genomes]
rs73468679	1.00[EUR][1000 genomes]
rs73468680	1.00[EUR][1000 genomes]
rs73470503	1.00[EUR][1000 genomes]
rs73470550	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73470586	1.00[AFR][1000 genomes]
rs73470587	0.90[AFR][1000 genomes]
rs73470602	0.87[AFR][1000 genomes]
rs73472529	0.80[AFR][1000 genomes]
rs73472549	0.85[AFR][1000 genomes]
rs7946444	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57016400-57019600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:57016400-57020800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:57016400-57020800	Enhancers	HMEC	breast
4	chr11:57017000-57020200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:57017000-57021000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:57017000-57021000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:57017200-57019600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:57017200-57019600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:57017200-57023200	Weak transcription	HSMMtube	muscle
10	chr11:57017200-57026000	Weak transcription	Fetal Brain Male	brain
11	chr11:57017800-57020200	Weak transcription	NHEK	skin
12	chr11:57017800-57020400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:57018000-57021200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:57018200-57028800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:57018400-57019600	Enhancers	Adipose Nuclei	Adipose
16	chr11:57018400-57019600	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr11:57018600-57019600	Enhancers	Psoas Muscle	Psoas
18	chr11:57018800-57019600	Enhancers	Fetal Muscle Leg	muscle
19	chr11:57019000-57019800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:57019200-57019600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:57019200-57019600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:57019200-57019600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:57019200-57019600	Enhancers	A549	lung
24	chr11:57019200-57019600	Flanking Active TSS	K562	blood
25	chr11:57019400-57019600	Enhancers	Rectal Smooth Muscle	rectum
26	chr11:57019400-57020400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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