Variant report

Variant	rs2860252
Chromosome Location	chr11:56923189-56923190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:56916772..56919758-chr11:56922805..56925674,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1124846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs12787728	1.00[CEU][hapmap]
rs12788466	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs12808495	0.97[EUR][1000 genomes]
rs17145552	0.97[EUR][1000 genomes]
rs17145556	0.97[EUR][1000 genomes]
rs17151664	1.00[CEU][hapmap];0.91[GIH][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17151671	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs17651297	0.87[EUR][1000 genomes]
rs1939488	1.00[CEU][hapmap]
rs1941034	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941037	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941054	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941055	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941056	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943477	0.92[EUR][1000 genomes]
rs1943478	0.92[EUR][1000 genomes]
rs1943485	0.97[EUR][1000 genomes]
rs1943488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2077188	0.97[EUR][1000 genomes]
rs2156457	0.89[EUR][1000 genomes]
rs2156458	0.89[EUR][1000 genomes]
rs2156460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs2212608	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860498	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860508	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866128	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866129	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960562	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017315	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017316	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017569	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017572	0.97[EUR][1000 genomes]
rs3017576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs34960942	0.92[EUR][1000 genomes]
rs35845551	0.87[EUR][1000 genomes]
rs61058019	1.00[EUR][1000 genomes]
rs6591419	1.00[CEU][hapmap]
rs7103802	1.00[EUR][1000 genomes]
rs71484422	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484424	0.97[EUR][1000 genomes]
rs71484425	0.97[EUR][1000 genomes]
rs746885	0.84[EUR][1000 genomes]
rs948843	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56919600-56923400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:56920400-56923200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:56921800-56923600	Enhancers	Placenta	Placenta
4	chr11:56922200-56923200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:56922200-56923400	Enhancers	Adipose Nuclei	Adipose
6	chr11:56922400-56923400	Enhancers	Colon Smooth Muscle	Colon
7	chr11:56922400-56923600	Enhancers	NHEK	skin
8	chr11:56922400-56924400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr11:56922400-56924400	Enhancers	Stomach Mucosa	stomach
10	chr11:56922400-56924600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr11:56922600-56923200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr11:56922600-56923600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:56922600-56924400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr11:56922600-56924400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr11:56922600-56924400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr11:56922600-56924800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr11:56922600-56925400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr11:56922600-56925400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr11:56922600-56925800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:56922800-56923600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:56922800-56923600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:56922800-56923600	Enhancers	K562	blood
23	chr11:56922800-56924200	Enhancers	H9 Cell Line	embryonic stem cell
24	chr11:56922800-56924200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:56922800-56924400	Enhancers	Stomach Smooth Muscle	stomach
26	chr11:56922800-56924600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:56922800-56924600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:56922800-56924600	Enhancers	Rectal Smooth Muscle	rectum
29	chr11:56922800-56925400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:56923000-56923200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:56923000-56923400	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr11:56923000-56923600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:56923000-56924400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links