Variant report

Variant	rs2860508
Chromosome Location	chr11:56931832-56931833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1124846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs12787728	1.00[CEU][hapmap]
rs12788466	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs12808495	0.97[EUR][1000 genomes]
rs17145552	0.97[EUR][1000 genomes]
rs17145556	0.97[EUR][1000 genomes]
rs17151664	1.00[CEU][hapmap];0.83[GIH][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17151671	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs17651297	0.87[EUR][1000 genomes]
rs1939488	1.00[CEU][hapmap]
rs1941034	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941037	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941054	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941055	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941056	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943477	0.92[EUR][1000 genomes]
rs1943478	0.92[EUR][1000 genomes]
rs1943485	0.97[EUR][1000 genomes]
rs1943488	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2077188	0.97[EUR][1000 genomes]
rs2156457	0.89[EUR][1000 genomes]
rs2156458	0.89[EUR][1000 genomes]
rs2156460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs2212608	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860252	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860498	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866128	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866129	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2960562	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017315	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017316	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017569	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017572	0.97[EUR][1000 genomes]
rs3017576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs34960942	0.92[EUR][1000 genomes]
rs35845551	0.87[EUR][1000 genomes]
rs61058019	1.00[EUR][1000 genomes]
rs6591419	1.00[CEU][hapmap]
rs7103802	1.00[EUR][1000 genomes]
rs71484422	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484424	0.97[EUR][1000 genomes]
rs71484425	0.97[EUR][1000 genomes]
rs746885	0.84[EUR][1000 genomes]
rs948843	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56928800-56932400	Enhancers	Fetal Brain Male	brain
2	chr11:56929800-56933600	Weak transcription	Stomach Mucosa	stomach
3	chr11:56929800-56934200	Weak transcription	Liver	Liver
4	chr11:56930200-56932200	Enhancers	Fetal Brain Female	brain
5	chr11:56930800-56932200	Enhancers	K562	blood
6	chr11:56931200-56932200	Enhancers	Adipose Nuclei	Adipose
7	chr11:56931400-56932000	Enhancers	Left Ventricle	heart
8	chr11:56931400-56932800	Enhancers	Fetal Muscle Leg	muscle
9	chr11:56931800-56932200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:56931800-56932200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:56931800-56932800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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